Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C08
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 29 0.32
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 27 0.74
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 2.3
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 26 2.3
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 26 2.3
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 3.9
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 25 3.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 3.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 3.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 5.2
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 5.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 5.2
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 24 6.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 6.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 24 9.1
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 24 9.1
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 24 9.1
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 0.32
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 114 KCLMMDQQQWRKGRGNKSKGTQSETRSEEKRKTSRQQLLKQKNQLSHPMMNSAP 275
K L ++ R+ + + QSE R EE++ + +LLK+++ P AP
Sbjct: 192 KKLTPEEMALRRIENARRRKNQSERRLEEEKMETINRLLKRQSNTGKPRRGRAP 245
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 0.74
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 270 HCSSSDDLADSFVLGAAAWRSSSFLHFE 187
HCS+ + F +GAA W S + F+
Sbjct: 204 HCSAQGKVGSGFDVGAATWGSCIYRRFD 231
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 99 FSNLIKCLMMDQQQWRKGRGNKSKGTQSETRSEEKRKTSRQQLLKQKNQL 248
F+N IK L +++ W+ +S E + S+ + KNQL
Sbjct: 634 FNNKIKALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQL 683
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 200 KEEDLQAAAPKTKESAKS 253
KE DL AAP T ESA+S
Sbjct: 74 KEYDLAIAAPSTTESARS 91
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 133 NSSGERVVVTKAKEHNQKLEVKKR 204
NSSG+R +T++K N +LE ++R
Sbjct: 147 NSSGQRQPLTESKISNSQLEYQQR 170
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 82 HSKTFTSCRIPQPGGSIV*TPPPRG 8
H + F S IPQP G ++ PP G
Sbjct: 167 HPELFESLGIPQPKGILLYGPPGTG 191
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 3.9
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 207 SSFLHFEFLIVFLCFCYHDPFSTAVDPSSDILLNSKRAKYTFTAK 73
+SF + FL+VF+C AVD S +LN ++ Y TA+
Sbjct: 151 NSFTTWSFLLVFVCATQ----DIAVDGWSLNMLNPEQLSYASTAQ 191
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 110 NKMSDDGSTAVEKGSW*QKQRNTIRNSK*RKEEDLQAAAPKTKESAKSS 256
+K DDGS A++ G +++ + K ++ +D KT++ + +
Sbjct: 156 SKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEEKA 204
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 162 CYHDPFSTAVDPSSDILLNSKRAK 91
CY+DP +T D + L+ SK+ K
Sbjct: 526 CYNDPNNTFKDDVAKTLIESKKRK 549
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 102 SNLIKCLMMDQQQWRKGR--GNKSKGTQSETRSEEKRKTSRQQLLKQK 239
S ++ L +++ K R NKS+GT +T + + R+++++Q+
Sbjct: 1463 SEIMDILNTTKEELEKVRQNSNKSEGTSKDTEIPNEEEMERKKVMQQE 1510
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 168 KGTQSETRSEEKRKTSRQQLLKQKNQLS 251
+GT E S ++ T QQLLKQ S
Sbjct: 663 QGTLEEATSYYQKNTELQQLLKQNESAS 690
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 126 MDQQQWRKGRGNKSKGTQSETRSEEKRKTSRQQLLKQK 239
++Q + ++G G+ +KG+ S + R + QQL+++K
Sbjct: 116 VEQIETQEG-GDNAKGSPSSENKDSDRNSRLQQLIEKK 152
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +3
Query: 144 RKGRGN-KSKGTQSETRSEEKRKTSRQQLLKQKNQL 248
++G+GN ++K T E R+ K+KT + K+K+++
Sbjct: 471 KQGKGNGRAKETPEEKRAR-KKKTKEDKAEKRKSKI 505
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 157 VTKAKEHNQKLEVKKRGRPPGSSS 228
V KA+EH+Q + ++ P SSS
Sbjct: 789 VQKAREHSQLFDANRQQSPNNSSS 812
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 90 ILLFSNLIKCLMMDQQQWRKGRGNKSKGTQSE 185
IL IK + D Q+W+ +G+K + E
Sbjct: 767 ILQSDQAIKKIERDMQEWKHNKGSKMAELEKE 798
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 196 KKRGRPPGSSS*NKRI 243
+KRGRPPG+ + KR+
Sbjct: 329 RKRGRPPGARNKIKRL 344
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 9.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 135 QQWRKGRGNKSKGTQSETRSEEKRKTSRQQLLKQKNQLSH 254
+ W K + K K TR EKRK+ ++ L QKN+ S+
Sbjct: 517 EAWSKQKEVKEK---RNTR-REKRKSKKEFLKAQKNEASN 552
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,652
Number of Sequences: 5004
Number of extensions: 26313
Number of successful extensions: 92
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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