Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C08
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0475 + 3422629-3422695,3422960-3423216 29 1.6
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963... 29 1.6
09_04_0434 - 17533633-17534637 28 2.8
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 28 2.8
12_02_0454 + 19199063-19200757,19202201-19202287 27 3.7
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 27 3.7
05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89... 27 4.9
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 27 4.9
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 27 6.5
03_05_0152 + 21291162-21291287,21291379-21291479,21293257-212933... 27 6.5
09_04_0504 + 18180321-18181013 26 8.6
09_04_0201 + 15543318-15543488,15543956-15544069 26 8.6
09_02_0402 + 8582235-8582360,8582452-8582552,8584328-8584425,858... 26 8.6
08_02_1077 - 24160545-24161936 26 8.6
08_02_1076 - 24151334-24152241,24152334-24152610 26 8.6
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +3
Query: 141 WRKGRGNKSKGTQSETRSEEKRKTSRQQLLKQKNQLSHPMMN 266
+ +G+ K K + + + ++K+K +++ K+KN+LS + N
Sbjct: 39 FEEGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKLSSAVTN 80
>01_01_1197 -
9630506-9630681,9630774-9630805,9630894-9630988,
9631569-9631642,9631732-9631843,9631967-9632030,
9632210-9632275,9632396-9632526,9632884-9633021,
9633115-9633227,9633306-9633471,9633588-9633701,
9633791-9633853,9633953-9634060,9634143-9634259,
9634343-9634505,9634646-9634743,9634852-9634949,
9635054-9635190,9635309-9635530,9635625-9635830,
9636758-9636845,9638085-9638668
Length = 1054
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 117 CLMMDQQQWRKGRGN--KSKGTQSETRSEEKRKTSRQQLLKQKNQLSHPMMNSAPCS*QR 290
C ++ Q++ K +S + + E+R + +LK+ N S PM+NS S R
Sbjct: 534 CSLVPLQRYTKALSTLQRSSLVEKSRQKPEERMSVLSDVLKRSNYDSEPMLNSCGISIAR 593
Query: 291 G 293
G
Sbjct: 594 G 594
>09_04_0434 - 17533633-17534637
Length = 334
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 133 NSSGERVVVTKAKEHNQKLEVKKRGRPPGSSS 228
+ SG+ VVV + ++ K+RGRPPGS +
Sbjct: 62 SGSGQLVVVGGGDGASIEVAKKRRGRPPGSKN 93
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 164 KQRNTIRNSK*RKEEDLQAAAPKTKESAKSSDDE 265
K+ +T+ + ++EED AAAP ES+ SSD+E
Sbjct: 326 KEHDTLTVAAGQQEED--AAAPPAAESSSSSDNE 357
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 129 DQQQWRKGRGNKS-KGTQSETR-SEEKRKTSRQQLLKQKNQLSHPMMNSAPCS 281
DQQ+ + G K+ KGT+ T S E++ TS+ + KQK Q+ + + C+
Sbjct: 529 DQQKGKTGNTKKNKKGTEKNTTISSEQKGTSKGK--KQKEQVVFSLGRNRSCN 579
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 144 RKGRGNKSKGTQSETRSEEKRKTSRQQLLKQKNQLSH 254
+KG+G K GT+S K + L +++ SH
Sbjct: 393 KKGKGKKDFGTRSAPHDARKTSKRKSPLFEERRNSSH 429
>05_01_0133 +
895107-895280,895960-896271,896815-897081,897161-897265
Length = 285
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 136 SSGERVVVTKAKEHNQKLEVKKRGR 210
+SG+ + + +H K+E+KKRGR
Sbjct: 50 TSGKEYITSDHLKHEIKMEIKKRGR 74
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 376 RCRPRPLPSTGALLP-LADFVLDPLGL 299
RCRP P P A LP L+D DP +
Sbjct: 37 RCRPSPSPKAKAALPLLSDVGRDPTAI 63
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 170 RNTIRNSK*RKEEDLQAAAPKTKESAKSSDDEQCTV*LTTR 292
+N IRN K +E AA+P +SDDE V + T+
Sbjct: 431 KNMIRNPKTPEEAQALAASPPKDMDFNNSDDETQDVNIATQ 471
>03_05_0152 +
21291162-21291287,21291379-21291479,21293257-21293354,
21294016-21294068,21295465-21295659,21295812-21296084
Length = 281
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 14 RWRRLNYGSPGLRNSARGK 70
RW+ +YGSP R ARG+
Sbjct: 187 RWQSEDYGSPTRRGDARGR 205
>09_04_0504 + 18180321-18181013
Length = 230
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 370 RPRPLPSTGALLPLADFVLDPLGLPLPRC 284
RP+ P+ L P A+ +G P PRC
Sbjct: 19 RPKGYPAAAQLTPAAEEAAAGVGDPCPRC 47
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 73 TFTSCRIPQPGGSIV*TPPPRGAP 2
T T R+P+P GS P PRG P
Sbjct: 2 TATPGRLPRPQGSSSAVPRPRGLP 25
>09_02_0402 +
8582235-8582360,8582452-8582552,8584328-8584425,
8585089-8585151,8586540-8586721,8586874-8587146
Length = 280
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 14 RWRRLNYGSPGLRNSARGK 70
RW+ +YGSP R ARG+
Sbjct: 186 RWQGEDYGSPTRRGDARGR 204
>08_02_1077 - 24160545-24161936
Length = 463
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 361 PLPSTGALLPLADF 320
PLPS G LLPL DF
Sbjct: 23 PLPSRGHLLPLLDF 36
>08_02_1076 - 24151334-24152241,24152334-24152610
Length = 394
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 361 PLPSTGALLPLADF 320
PLPS G LLPL DF
Sbjct: 19 PLPSRGHLLPLLDF 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,498
Number of Sequences: 37544
Number of extensions: 212440
Number of successful extensions: 702
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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