Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C08
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.1  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   3.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   4.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   4.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   8.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   8.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          20   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 121  RHFIKFEKSKIHVHSKTFTSCRIPQPGGSI 32
            RHFI    S +HV++    S  +  P G++
Sbjct: 989  RHFISGIDSNLHVYAPLKISLDVNTPKGNM 1018


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 TVHRVANNEVEVDLKDLRQSLPRARVHQLKE 357
           T H + +   EVD++   + LPR+     K+
Sbjct: 64  TKHGILDKNAEVDVQKALRHLPRSMQDSTKK 94


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 201 KRKTSRQQLLKQKNQLSHPMMNS 269
           ++KTS+ ++ K  NQ+ H +  S
Sbjct: 85  QQKTSKLKIYKWNNQILHILWTS 107


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 201 KRKTSRQQLLKQKNQLSHPMMNS 269
           ++KTS+ ++ K  NQ+ H +  S
Sbjct: 68  QQKTSKLKIYKWNNQILHILWTS 90


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = +3

Query: 117 CLMMDQQQWRKGRGNKSKGTQSETRSEEKRKTSRQQLLKQKNQLSH 254
           C     +++RK R  +    + E   EE+    R    +++ Q S+
Sbjct: 4   CSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSY 49


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = +3

Query: 117 CLMMDQQQWRKGRGNKSKGTQSETRSEEKRKTSRQQLLKQKNQLSH 254
           C     +++RK R  +    + E   EE+    R    +++ Q S+
Sbjct: 4   CSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSY 49


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 43  GGSIV*TPPPRGAP 2
           GGSI+  PP R  P
Sbjct: 89  GGSIITIPPTRKLP 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,767
Number of Sequences: 438
Number of extensions: 1897
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)