Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C07
(207 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 27 1.6
09_03_0199 - 13421210-13421578 27 2.1
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 2.7
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 27 2.7
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 27 2.7
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 26 3.6
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 26 4.8
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178... 26 4.8
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 26 4.8
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 26 4.8
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 25 6.3
01_01_0205 + 1764034-1767601,1767934-1767944 25 6.3
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 25 8.4
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 25 8.4
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 94 HYSLLPNYLCLLNQNLESLSNIHWYY 17
H L+P L L+SLSN+H+YY
Sbjct: 624 HEMLIPAVLKPSGLKLDSLSNLHFYY 649
>09_03_0199 - 13421210-13421578
Length = 122
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 7 GYYYNTNEYWKVIQDSGLVDIDNLEEANNV 96
G YN N WKV+ + + D+ +AN+V
Sbjct: 65 GGSYNINSMWKVLDAAMMFTADSCSKANDV 94
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 4 RGYYYNTNEYWKVIQDSGLVDIDN-LEEANNVNEKF 108
+GY + +E K+ DSGL+ ID+ E ++ E++
Sbjct: 671 KGYEFKKDEIVKMWMDSGLILIDSGTERPEDIGERY 706
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 100 EKFGNIEQKVNDINKYQVNMINK 168
E F N++Q +N+I++Y + +NK
Sbjct: 110 ESFNNVKQWLNEIDRYASDNVNK 132
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 100 EKFGNIEQKVNDINKYQVNMINK 168
E F N++Q +N+I++Y + +NK
Sbjct: 94 ESFNNVKQWLNEIDRYASDNVNK 116
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 100 EKFGNIEQKVNDINKYQVNMINK 168
E F N++Q +N+I++Y +NK
Sbjct: 94 ESFNNVKQWLNEIDRYASENVNK 116
>12_01_0855 +
8023266-8023459,8023830-8023866,8023911-8023966,
8025102-8026215
Length = 466
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 34 WKVIQDSG----LVDIDNLEEANNVNEKFGNIEQKVNDINKYQVNMINKEKFVT 183
WK I D L IDNL + +E EQ V+ Y++N+IN+E F T
Sbjct: 284 WKNITDRTSAYELSHIDNLVNHED-DETKRQKEQSVHITLLYEINLINEELFDT 336
>03_01_0225 +
1784211-1784324,1784398-1784668,1784992-1785248,
1785338-1785450,1791599-1791746,1791943-1792080,
1792448-1792525
Length = 372
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = -2
Query: 203 LLLLSSSV---TNFSLFIILT*YLFISLTFCSILPNFSLTLFA 84
LLL+S+S+ +++ L+I+ T ++ S ++C + S TLF+
Sbjct: 168 LLLISTSMATASSYFLYILNTRFIGTSCSYCLLSAFLSFTLFS 210
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 106 FGNIEQKVNDINKYQVNMINKEKFVTDE 189
FG+I QK+ D+ K + +NK VT +
Sbjct: 362 FGDIPQKIADLQKQALTNLNKVGEVTSQ 389
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 55 GLVDIDNLEEANNVNEKFGNIEQKVN 132
G +DI NLE +N NIE+KV+
Sbjct: 698 GELDICNLENSNEEQANGANIEEKVD 723
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 76 LEEANNVNEKFGNIEQKVNDINKYQVNMINKEKFV 180
LEE + VNE ++ N+ +KYQ + + K+K V
Sbjct: 1442 LEEDDLVNEDDTKPDEHTNEEHKYQCSDLVKDKHV 1476
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 125 FCSILPNFSLTLFASSKLSMS 63
F SILPNF+L L + LSMS
Sbjct: 808 FSSILPNFTLYLSKTWYLSMS 828
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 37 KVIQDSGLVDIDNLEEANNVNEKFGNIEQKVNDINKY 147
K I D V + N ++ + E+ ++ K+N++N Y
Sbjct: 292 KEIDDLECVLLSNRKQGGLLQEEIQKLKDKINNLNSY 328
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 61 LNQNLESLSNIHWYYNN 11
L+ +L SLS +HW Y+N
Sbjct: 801 LSYSLRSLSILHWQYDN 817
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,186,048
Number of Sequences: 37544
Number of extensions: 58058
Number of successful extensions: 134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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