Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C06
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    40   6e-04
Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical pr...    38   0.003
Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical pr...    38   0.003
Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical pr...    35   0.018
Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical pr...    33   0.071
Z70308-3|CAA94350.1|  207|Caenorhabditis elegans Hypothetical pr...    32   0.12 
AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical ...    32   0.12 
AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical ...    30   0.50 
Z73896-3|CAA98060.1|  208|Caenorhabditis elegans Hypothetical pr...    29   0.88 
Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    26   8.2  

>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
 Frame = +1

Query: 40  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATE 207
           ++  L+LA+V C+G  H++   +   KQ    VN HN  R  +AKG+     +   +AT 
Sbjct: 1   MQTALVLALV-CVG-AHAQ--FSEGGKQ--SMVNAHNAVRSSIAKGEYVAKGTKKDSATN 54

Query: 208 MKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW-YSTTDST 360
           M  M WD  L              H+PDK+        GENL+W YS++  T
Sbjct: 55  MLKMKWDNSLAQSAQNYANGCPMQHSPDKSY-------GENLFWAYSSSPIT 99


>Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.10 protein.
          Length = 207

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = +1

Query: 136 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 303
           +N HN  R  +AKG      +     T +  M WD  +           +N+ N   T  
Sbjct: 27  INAHNTLRSKIAKGTYVAKGTQKSPGTNLLKMKWDSAVAASA-------QNYANGCPTGH 79

Query: 304 SGRFQTGENLYWYSTTDSTYKLN 372
           SG    GENLYWY T+ S   LN
Sbjct: 80  SGDAGLGENLYWYWTSGSLGDLN 102


>Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical
           protein C39E9.2 protein.
          Length = 208

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +1

Query: 136 VNGHNYRRQLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 303
           +N HN  R  +AKG      +  PAA++M  M WD  +             + N   T  
Sbjct: 28  LNVHNTLRSRIAKGTYVAKGTAKPAASDMLKMKWDATVAASAQA-------YANKCPTGH 80

Query: 304 SGRFQTGENLYWYSTT 351
           SG    GENLYWY T+
Sbjct: 81  SGAAGLGENLYWYWTS 96


>Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical
           protein F49E11.5 protein.
          Length = 212

 Score = 35.1 bits (77), Expect = 0.018
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 145 HNYRRQLLAKGQ-VSGH---PAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGR 312
           HNY R  +A G+ V+G+   P+A+ M  ++WD  L              H+      + R
Sbjct: 34  HNYLRSQIALGKYVAGNSTKPSASNMMKLIWDTTLETTAQDYSTGCPTGHS------ASR 87

Query: 313 FQTGENLYWYST 348
              GEN+YW+++
Sbjct: 88  ANIGENMYWWTS 99


>Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.4 protein.
          Length = 209

 Score = 33.1 bits (72), Expect = 0.071
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +1

Query: 136 VNGHNYRRQLLAKG--QVSG--HPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 303
           V+ HN  R  LA G   ++G   PA + ++ M WD  L           + + N   T  
Sbjct: 29  VDLHNSFRSKLATGTYSINGTLKPAGSNIRKMSWDSTLATSA-------QTYANTCPTGF 81

Query: 304 SGRFQTGENLYWYSTTDSTYKLNV 375
           S    TGENLYW +T+ +   L++
Sbjct: 82  SNTQGTGENLYWRTTSANISGLDI 105


>Z70308-3|CAA94350.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.6 protein.
          Length = 207

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
 Frame = +1

Query: 55  ILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATEMKYMV 222
           +L +V CI  V S+     S  Q +  V+ HN  R  +AKG      +   + + M+ + 
Sbjct: 4   LLLLVCCIAGVFSQFT---STGQ-QAIVDAHNKLRSSIAKGTYVAKGTTQKSGSNMRKIK 59

Query: 223 WDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLN 372
           WD  +           +N+ N   T  S     GENLYWY T+ +   L+
Sbjct: 60  WDATVATSA-------QNYANTCPTGHSQGSGYGENLYWYWTSGTIGNLD 102


>AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical
           protein H10D18.4 protein.
          Length = 208

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = +1

Query: 58  LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATEMKYMVW 225
           +   +C+  +   +    S       V+ HN  R  +A+G      +  P+A+ M+ +VW
Sbjct: 1   MKFALCLLAIFGCATAQFSSTAQGQIVDAHNKLRSAIAQGSYVAAGTQEPSASNMRKIVW 60

Query: 226 DEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW 339
           DE +         Q      PD   G+     GENLYW
Sbjct: 61  DETV-----AAAAQEYAEGCPDDHSGT---SYGENLYW 90


>AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical
           protein F02E11.5 protein.
          Length = 207

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
 Frame = +1

Query: 40  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKG-----QVSGHPAAT 204
           +RAL++LA+V  +  V+ +     S    K  V+ HN  R  +AKG     +    P + 
Sbjct: 1   MRALILLAVVASVS-VYGQ----FSKAGQKAIVDAHNTLRSSIAKGTYVANKTRKEPGSN 55

Query: 205 EMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYW 339
            +K M WD  +             + N   T G G+ + GENLYW
Sbjct: 56  ILK-MKWDPTIAKSAQA-------YANTCPT-GHGKSKYGENLYW 91


>Z73896-3|CAA98060.1|  208|Caenorhabditis elegans Hypothetical
           protein F09E8.5 protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +1

Query: 136 VNGHNYRRQLLAKGQVSGHP----AATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 303
           +N HN  R  +AKG          AA++M  M W   L          ++ + N   T  
Sbjct: 28  LNVHNTLRSRIAKGTYVARGTVKHAASDMLKMKWLRSLATS-------SQIYANRCPTGH 80

Query: 304 SGRFQTGENLYWYSTT 351
           S     GENLYWY T+
Sbjct: 81  SNMIGVGENLYWYWTS 96


>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 185 DT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 90
           D   LA NC+     ++K +IC+H   S DL+
Sbjct: 217 DAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248


>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 228
           NGHNY++  + K + +G    TE  ++ WD
Sbjct: 587 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 614


>AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical
           protein C08F1.5a protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 NGHNYRRQLLAKGQVSGHPAATEMKYMVWD 228
           NGHNY++  + K + +G    TE  ++ WD
Sbjct: 510 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 537


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 377  PTFSLYVLSVVEYQYKFSP-VWNLPDPKVLS 288
            P F   V++ VEY++K++P V    +P++L+
Sbjct: 1578 PVFEKSVVNQVEYEHKYTPTVVKSTEPRILN 1608


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 170 ASNCLL*LCPLTKSLIC 120
           +SNC+L L PL  SL+C
Sbjct: 134 SSNCVLLLAPLINSLVC 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,458
Number of Sequences: 27780
Number of extensions: 166499
Number of successful extensions: 376
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)