Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C06
(389 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 23 0.94
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 22 2.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.6
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 6.6
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 21 6.6
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 20 8.7
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 23.4 bits (48), Expect = 0.94
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -2
Query: 388 HSVVPHSVCMCYRSLNTNTNFHQSGIFPIPKSCP 287
H V S C L + +GI P+P CP
Sbjct: 188 HLVGGSSALACAIMLGPRLGRYDNGIDPLPLGCP 221
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 2.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 364 CMCYRSLNTNTNFHQSGIFPIPKSCPGY 281
C YR L N N+ + P+P C +
Sbjct: 101 CNNYRKLYYNINYIEQIPIPVPIYCGNF 128
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 6.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 131 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 235
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 20.6 bits (41), Expect = 6.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 97 SLLNLSCKQIKDFVNGHNYRR 159
S L+ SC ++ N +NY++
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKK 325
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 20.6 bits (41), Expect = 6.6
Identities = 10/37 (27%), Positives = 15/37 (40%)
Frame = +1
Query: 43 RALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNY 153
RA + + C G V + CK + F +G Y
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRYY 435
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 20.2 bits (40), Expect = 8.7
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 110 KFSRDLLWTCPIHTT 66
+F RDL+WT ++ +
Sbjct: 91 QFVRDLIWTPTVYVS 105
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,078
Number of Sequences: 438
Number of extensions: 2206
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9514659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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