Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C05
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   4.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   7.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.5  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   7.5  

>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 267 LEDSPLTDTSLTA-QKMEKWVEAQRKGEKIDIDVYGKPTEKQLRELE 404
           + D PL D+   +  + EK + A  K EK D D+Y +  ++ + +LE
Sbjct: 231 IADKPLKDSMFNSNSEKEKIMHALEKAEK-DADIYSEFIQQYMEQLE 276


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 251 VQYGVSLFHLFCF 213
           + YG+SLFHLF F
Sbjct: 348 IDYGMSLFHLFLF 360


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 237 NTILDKMNHSLEDSPLTDTSLTAQKMEKWVEAQRKGEKIDIDVYGKPTEKQL-RELEHVR 413
           N++LD + HSL+     D S+++QK+   + +    E I++    K + +QL +EL  + 
Sbjct: 691 NSLLDALEHSLQ-----DISMSSQKLGNGISS----ELIELQKDMKESYRQLVQELRSLY 741

Query: 414 NLSN 425
           NL +
Sbjct: 742 NLQH 745


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 469 NSGVRFGPKVAESRRMNPDGTDVGLF 546
           N+   + P  A +   N DG+D GLF
Sbjct: 110 NTNAAYYPNAAATTTTNADGSDKGLF 135


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 488 PKRTPEFSSQASSVKLSPCRLIAQVSDVLEFSQLLLSRFPVNVY 357
           P      +S ASSV   P    +Q +D    +Q  L R P N Y
Sbjct: 297 PTSESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRPANTY 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,407
Number of Sequences: 5004
Number of extensions: 40256
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)