Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C05
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 31 0.47
12_01_0960 + 9554658-9554761,9554948-9555014,9555558-9555590,955... 30 1.1
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 2.5
07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584 29 2.5
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672... 29 2.5
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 28 5.8
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 28 5.8
07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159 27 7.6
04_03_0895 + 20633554-20634480 27 7.6
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 31.5 bits (68), Expect = 0.47
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -1
Query: 429 AHCSSF*RARVLAIASQSVSRKRLCRSSPLSFGLRPTSPSSAPSDWYP-STENPLANDSF 253
A C+S A + AS+ V++K RS +S ++P +PS + WYP + + L +D+
Sbjct: 193 AECTSL--APSTSSASRVVNKKPPRRSLNVSGPVQPYNPS-LKNFWYPVAFSSDLKDDTM 249
Query: 252 CPIWCF 235
PI CF
Sbjct: 250 VPIDCF 255
>12_01_0960 +
9554658-9554761,9554948-9555014,9555558-9555590,
9555676-9555729,9555914-9555930,9556881-9556980
Length = 124
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 390 IASQSVSRKRLCRSSPLSFGLRPTSPSSAPSDWYPSTENPLANDSFCPIWCFT 232
+ ++ V R RSSP + + +APSDW+ TENP + + + CF+
Sbjct: 7 VEARGVGRLNGRRSSPTASPI----DEAAPSDWFKGTENPPLQEHYKGV-CFS 54
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 270 EDSPLTDTSLTAQKMEKWVEAQRKGEKIDIDVYGKPTEKQLRELEHVR 413
E+ T T L + EK +E +R+ + + +G+ E+Q RELE R
Sbjct: 62 EEHEKTRTELEVK--EKQLEEERQNHTLTVQRHGEELERQSRELERQR 107
>07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584
Length = 496
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -1
Query: 402 RVLAIASQSVSRKRLCRSSPLSFGLRPTSPSSAPSDW 292
RV +A+ S++R + R ++F L PTS S+APS W
Sbjct: 456 RVEPVAASSLARFIVLRC--VTFSLTPTSGSAAPSIW 490
>06_03_0467 -
21066354-21066501,21066831-21066893,21067223-21067291,
21067666-21067742,21069451-21069558,21070008-21070274,
21071964-21072607,21073370-21073550,21073688-21073834
Length = 567
Score = 29.1 bits (62), Expect = 2.5
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Frame = +2
Query: 215 NKKGETVKHHIG---QNESFARGFSVDGY-QSDGAEDGEVGRSPKERGEDRHRRLRETD* 382
+K GET G Q SF S D + D E + G + KE+GE++ R T
Sbjct: 446 SKGGETSGGKDGTEWQYPSFWPSDSQDHHGDKDDIEAKQKGETEKEKGEEKQSFSRYTFA 505
Query: 383 EAIARTRARQKLEQ*ACRGTILHWKLVRKTRACVLARRWQNHG 511
+ + + K+ G + KL CV+ + HG
Sbjct: 506 KKYSMNKETLKISSILHSGILSESKLPENFPVCVVEGEYDEHG 548
>03_06_0559 +
34719296-34719410,34719519-34719577,34719664-34721322,
34722421-34722562,34722645-34723330
Length = 886
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 421 AMSLQGDNFTLEACEENSGVRFGPKVAESRRMNPDGTDVGLFGR 552
++ G+ + N G GPKV S R +PD + GR
Sbjct: 265 SLKSSGNTSASVVSQSNGGAPVGPKVKASSRSSPDSRATNVQGR 308
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 261 HSLEDSPLTDTSLTAQKM-EKWVEAQ-RKGEKIDIDVYG--KPTEKQLRELEHVRNLSNE 428
+S + +P D +LT + + K +E +G+K+DI V G K +++ E+E V+ E
Sbjct: 119 YSNDSNPFGDPNLTEKFVWRKKIERDVSQGQKVDISVKGEKKKQRERMAEIEKVKKRREE 178
Query: 429 PA 434
A
Sbjct: 179 RA 180
>07_03_0828 + 21789849-21790259,21790319-21790951,21791635-21792159
Length = 522
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 432 QAHCSSF*RARVLAIASQSVSRKRLCRSSPLSFG 331
+A+ S+ R R L IA + S +RLC +SP S G
Sbjct: 295 RAYLSNGVRRRPLKIAGAARSLRRLCITSPCSVG 328
>04_03_0895 + 20633554-20634480
Length = 308
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 333 GLRPTSPSSAPSDWYPSTENPLANDSFCPIWCFTVSPFL 217
G+ PSS P P +PL D+ C W +SP L
Sbjct: 203 GILSPLPSSLPPAAVPGQFSPLPFDASCISWLNELSPIL 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,900,126
Number of Sequences: 37544
Number of extensions: 291597
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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