Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C04
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 128 2e-31
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 126 7e-31
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.4
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 1.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 4.3
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 24 5.6
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 24 5.6
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 23 9.8
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 23 9.8
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 23 9.8
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 23 9.8
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 128 bits (309), Expect = 2e-31
Identities = 55/91 (60%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Frame = +3
Query: 21 MAKRTKNVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 194
M KRTK VG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 195 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 287
CK+ +AGGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 126 bits (305), Expect = 7e-31
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Frame = +3
Query: 21 MAKRTKNVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 194
M KRTK VG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 195 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 287
C +T+AGGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 117 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 206
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 1.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 126 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 215
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 4.3
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = -2
Query: 81 MHHNVCHIYQ-*FRHSWCVWP 22
MHH CH++Q F W +P
Sbjct: 479 MHHYACHVWQKLFETQWYEYP 499
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 24.2 bits (50), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 208 VLLHRLHDQMPTHERFMASLPQNEQV 131
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 43 SELLVNM--AHVMVHLYVKWSKRWK 111
S+LLV+ + VH+YVK SK W+
Sbjct: 429 SQLLVSSDGETLYVHIYVKSSKSWR 453
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 23.4 bits (48), Expect = 9.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2
Query: 48 FRHSWCVWPF 19
+RH WC W F
Sbjct: 7 YRHIWCFWRF 16
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 23.4 bits (48), Expect = 9.8
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +3
Query: 180 IWSCKRCKRT 209
IW+CK C++T
Sbjct: 65 IWTCKNCRKT 74
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 166 RFMASLPQNEQVYFA 122
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 169 ERFMASLPQNEQVYFA 122
ERF ++PQ++QV FA
Sbjct: 273 ERFAVAVPQSKQVSFA 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,998
Number of Sequences: 5004
Number of extensions: 22357
Number of successful extensions: 59
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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