Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C03
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 29 1.6
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 28 2.9
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 27 3.8
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 27 5.0
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 27 6.6
10_01_0086 - 1064650-1065379,1065796-1065950,1066029-1066141,106... 26 8.7
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 26 8.7
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +3
Query: 144 QDAAPEEVTSTEVKESPIKKSPTKKT------EVPESNGKENGTXXXXXXXXXXXXNGDA 305
++ + V S+E K P +K +K T + +S+ KE+G NGD
Sbjct: 106 ENTVEKPVESSEEKAPPKEKEESKDTFDDANGKTEQSSAKEDGDSESGSGQSDGSKNGDD 165
Query: 306 EESNDATENGDVTE 347
EE ++ ++ + ++
Sbjct: 166 EEKSEEKKDDEQSD 179
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +3
Query: 126 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDA 305
D ++EK P E ++ ++ E I++ + TEVP E T + D
Sbjct: 234 DESIEKPADEPIEKSADQITERSIEQPAERVTEVPIQEPTERVT----ETPIVKPNDNDV 289
Query: 306 EESNDATENG---DVTEVKE 356
EE D T+ TEVK+
Sbjct: 290 EEHTDKTDESIFVSSTEVKQ 309
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 156 PEEVTSTEVKESPIKKSPTKKTEVPESNGKENGT 257
P EV E + SP KS E S KENGT
Sbjct: 1165 PSEVVDDEDQRSPPPKSDHSLIEKESSEVKENGT 1198
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 141 KQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKE 248
+ + A E+ + E ESP K + +E PES KE
Sbjct: 736 RANEAKEKAATAENSESPESKKEKENSENPESKEKE 771
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 156 PEEVTSTEVKESPIKKSPTKKTEVPESNG 242
P +V + E+P+ K+PT K E P G
Sbjct: 200 PPKVNAVATHEAPLSKAPTDKGEEPPIAG 228
>10_01_0086 -
1064650-1065379,1065796-1065950,1066029-1066141,
1066238-1066345,1066773-1066890,1066996-1067069,
1067595-1067690,1068062-1068455
Length = 595
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +3
Query: 195 IKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEESN 317
+ PT+K ++ E+ K NG+ G EE N
Sbjct: 551 VSSKPTRKDDMAEAKPKCNGSSDGGSSVAHAKATGGLEEQN 591
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 138 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKE 248
EK+D EE E K+ +K K+ E E NG E
Sbjct: 252 EKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNE 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,503,201
Number of Sequences: 37544
Number of extensions: 102647
Number of successful extensions: 368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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