Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C02
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 31 0.035
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 28 0.25
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 3.1
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 24 4.0
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 24 4.0
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 24 5.3
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 23 7.1
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 23 7.1
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 23 7.1
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 23 7.1
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 23 7.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 23 7.1
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 23 7.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 23 9.3
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 23 9.3
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 23 9.3
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 31.1 bits (67), Expect = 0.035
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 107 FHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPV 12
F +FD+R K + +YG P P + +E V P+
Sbjct: 571 FRRFDFRGVKAVVMYGPPTNPQFYVELVRMPM 602
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 28.3 bits (60), Expect = 0.25
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 203 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFD 93
+Y + + A H + +S+ L+H+FQ++ S EF +D
Sbjct: 319 SYQRLVSFA-HLYSYTSVKCLVHWFQIMRSAEFRMYD 354
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 119 NSGEFHKFDYRKQKNIKIYGTPVP-PSYSLEHVSAP 15
N + +YRK+K I ++G VP P + E P
Sbjct: 95 NRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFP 130
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -2
Query: 191 IPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQK 78
I I++ +P + HY +VN ++ RK+K
Sbjct: 231 IDGISERSPWKGELRDSRHYCFVVNGSNIKPYNQRKEK 268
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 269 PVIIPTPLYLAFPFIGYDFLGQNYTNIPNI 180
P + PT LYL PF+ + N++ I ++
Sbjct: 47 PSVEPTALYLQQPFVRTHLVKGNFSTIVSL 76
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 23.8 bits (49), Expect = 5.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 126 LKIMQQLINR*PCRCVLSNVWYVSVILSKEVIANKRKCQVKWCG 257
++I +QLI+ RC LS++ V ++ + KC + G
Sbjct: 413 IQISEQLISSLLNRCTLSSIQAVFLLSLYHFLTGNFKCAYSYLG 456
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 23.4 bits (48), Expect = 7.1
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 251 PLYLAFPFIGYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKF--DYRKQK 78
P+++ + G+ LGQ + N+A+ A N L+ Y+ ++S F + DY +
Sbjct: 248 PVFVIGAYSGHHLLGQGQASSLNLAEQQAA---YNSLISYY--IHSPPFRQLPSDYLEVN 302
Query: 77 NIKI 66
+ KI
Sbjct: 303 DGKI 306
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 23.4 bits (48), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 65 YGTPVPPSYSLEHVSA 18
YG PV P YSL + SA
Sbjct: 453 YGCPVVPRYSLFYYSA 468
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 23.4 bits (48), Expect = 7.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 74 IKIYGTPVPPSYSLEHVSAPVFP 6
I+ YG P PPS S+ + PV P
Sbjct: 17 IEKYGNPEPPSSSILINTRPVNP 39
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 8 EKPVRLHVPKNKKEELEYRKFLCFFVYD 91
E + + +P+N+ EL+Y +CF +++
Sbjct: 817 ESGLPMKLPRNQIPELDYLTQICFELFE 844
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 213 EVIANKRKCQVKWCGND 263
E +A Q+ WCGND
Sbjct: 265 ETVAEASLKQMAWCGND 281
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 7.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 243 VKWCGNDNRKHNFEQD 290
V+WCG + RK + Q+
Sbjct: 38 VRWCGTEGRKQDPSQE 53
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 75 HKNLRYSSSSFLFFGTCKR 19
HK L Y FLF+ C+R
Sbjct: 278 HKMLYYDVDPFLFYCMCRR 296
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 95 DYRKQKNIKIYGTPVPPSYSL 33
D +KQK +K YG P +Y++
Sbjct: 1259 DDKKQKIMKSYGVNEPQAYAI 1279
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 68 IYGTPVPPSYSLEHVSAPVFP 6
IYG+P+ P S P FP
Sbjct: 228 IYGSPLSPPNSAFQAEMPYFP 248
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 86 YDNQIYEILRNLLIENN 136
YD+Q+ ILR+L IE +
Sbjct: 354 YDDQLQSILRSLAIEGD 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,649
Number of Sequences: 5004
Number of extensions: 23166
Number of successful extensions: 81
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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