Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C02
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 35 0.010
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 31 0.12
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 29 0.49
01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982... 27 2.6
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 26 4.6
03_05_0082 - 20595935-20596039,20596103-20596189,20596468-205965... 26 4.6
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 26 6.1
03_03_0013 - 13743730-13744239,13745337-13745564,13745656-13745733 25 8.0
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 173 HAPAGSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYGTPVPPSYSL 33
H P ++ ++H Q++ G K+DY N + YG PP+Y +
Sbjct: 342 HEPQATATKNMIHLAQMIRGGTIAKYDYGNAGDNREHYGQATPPAYDV 389
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 125 LVNSGEFHKFDYRKQK-NIKIYGTPVPPSYSLEHV--SAPVF 9
+V +G +FDY K N+K Y P PP Y+L + P+F
Sbjct: 267 VVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIF 308
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 125 LVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHV--SAPVF 9
++ G F K+DY N++ YG PP++ L + S P++
Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIW 389
>01_03_0229 +
13995610-13995844,13996391-13996445,13998126-13998211,
13999484-13999671,14000111-14000169,14000618-14000646,
14000742-14001138,14001569-14002028
Length = 502
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 233 PFIGYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNS 114
P +DF+GQN+T+ ++ AP + + YFQ + S
Sbjct: 215 PVTFHDFMGQNFTS-EHLPVSAPGATPPGPYIAYFQPLQS 253
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 269 PVIIPTPLYLAFPFIGYDFLGQNYTNIPNIAQHAPAGSS 153
P+++P ++ P IG D G T+ A P G S
Sbjct: 195 PLVVPRGWWIVSPTIGNDRFGDGGTSSSTAAPLTPTGHS 233
>03_05_0082 -
20595935-20596039,20596103-20596189,20596468-20596586,
20596686-20596924,20597044-20597100,20597203-20597909,
20599827-20600192
Length = 559
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 171 VLSNVWYVSVILSKEVIANKRKCQVKWCG 257
+LS W+V V+ I R+C++ W G
Sbjct: 277 MLSISWWVIVVAQFIYIVTSRRCRLTWTG 305
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 101 KFDYRKQKNIKIYGTPVPPS 42
KFDY KQK ++I+G PS
Sbjct: 218 KFDYGKQKILQIFGKTSIPS 237
>03_03_0013 - 13743730-13744239,13745337-13745564,13745656-13745733
Length = 271
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 203 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIY 63
NYT+IPN +++ N LH NS + D +++ Y
Sbjct: 133 NYTSIPNAKKNSKINKRGNPHLHIIYKNNSQIYASIDDENDESMASY 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,788,012
Number of Sequences: 37544
Number of extensions: 134461
Number of successful extensions: 318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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