Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C02
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 58 1e-09
Z81055-8|CAB02896.2| 409|Caenorhabditis elegans Hypothetical pr... 57 3e-09
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 56 3e-09
Z79696-2|CAB01973.1| 405|Caenorhabditis elegans Hypothetical pr... 55 1e-08
AF067942-2|AAG45574.1| 403|Caenorhabditis elegans Hypothetical ... 49 5e-07
AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical ... 49 7e-07
AF067942-3|AAL11486.1| 351|Caenorhabditis elegans Hypothetical ... 46 6e-06
Z70780-7|CAA94824.1| 411|Caenorhabditis elegans Hypothetical pr... 44 1e-05
AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical ... 41 2e-04
Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 26 4.1
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 26 5.4
Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical p... 25 9.4
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 25 9.4
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 58.0 bits (134), Expect = 1e-09
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = -2
Query: 203 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHV 24
N + I H PAG+S +LH+ Q+V +FD+ K N+KIYG P PP Y + +
Sbjct: 518 NNSRIGIYLAHNPAGTSSRNILHFAQMVKKKRMSRFDHGKDLNLKIYGAPSPPEYDIRKI 577
Query: 23 SAPVF 9
++ ++
Sbjct: 578 NSSIY 582
>Z81055-8|CAB02896.2| 409|Caenorhabditis elegans Hypothetical
protein F01G10.7 protein.
Length = 409
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = -2
Query: 173 HAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPVF 9
H PA +S+ L H+ QLV S KFDY NI YG P PP Y L ++ P +
Sbjct: 277 HTPAATSVKDLQHWIQLVKSQTVSKFDYGTDGNIIEYGQPTPPEYDLTQINTPTY 331
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 56.4 bits (130), Expect = 3e-09
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -2
Query: 230 FIGYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPV 51
FIG N T IP H PAGSS N + H Q+ + G FD ++KN+K YG +
Sbjct: 271 FIGTANENWNQTRIPVYLAHTPAGSSSNVMAHLDQMFSYGGVPTFDMGEEKNLKAYGQKL 330
Query: 50 PPSYSLEHVS-APVF 9
PP Y+ ++ P++
Sbjct: 331 PPQYNFTGIADVPIY 345
>Z79696-2|CAB01973.1| 405|Caenorhabditis elegans Hypothetical
protein F54F3.3 protein.
Length = 405
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -2
Query: 203 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHV 24
N T +P H PAG+S ++H+ Q+V G K+DY ++ N K YG P+Y V
Sbjct: 273 NATRVPIYVAHTPAGTSTQNIVHWIQMVRHGGTPKYDYGEKGNKKHYGQANVPAYDFTTV 332
Query: 23 SAPVF 9
+ PV+
Sbjct: 333 NRPVY 337
>AF067942-2|AAG45574.1| 403|Caenorhabditis elegans Hypothetical
protein ZK6.7a protein.
Length = 403
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -2
Query: 203 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSY 39
N T +P A H PAG+S ++H+ Q+V+ G +D+ + N K YG PP Y
Sbjct: 271 NQTRVPVYATHDPAGTSTQNIVHWMQMVHHGGVPAYDWGTKTNKKKYGQANPPEY 325
>AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical
protein R11G11.14 protein.
Length = 404
Score = 48.8 bits (111), Expect = 7e-07
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = -2
Query: 203 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSY 39
N T +P A H PAG++ ++H+ Q+V G +D+ ++N K YG PP Y
Sbjct: 272 NSTRVPVYASHDPAGTATQNIVHWIQMVRHGGVPAYDWGSKENKKKYGQANPPEY 326
>AF067942-3|AAL11486.1| 351|Caenorhabditis elegans Hypothetical
protein ZK6.7b protein.
Length = 351
Score = 45.6 bits (103), Expect = 6e-06
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -2
Query: 203 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYG--TPVPPSYSLE 30
N T +P A H PAG+S ++H+ Q+V+ G +D+ + N K YG T +P S
Sbjct: 271 NQTRVPVYATHDPAGTSTQNIVHWMQMVHHGGVPAYDWGTKTNKKKYGQSTTLPLSREPR 330
Query: 29 HVSAPVFP 6
S V P
Sbjct: 331 FTSTGVMP 338
>Z70780-7|CAA94824.1| 411|Caenorhabditis elegans Hypothetical
protein F46B6.8 protein.
Length = 411
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -2
Query: 167 PAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSY 39
PAG+S ++H+ Q+V +G FD+ K+ N K YG PP Y
Sbjct: 290 PAGTSTQNIVHWMQMVRNGRVPAFDWGKKINKKKYGQDTPPEY 332
>AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical
protein Y50E8A.7 protein.
Length = 401
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2
Query: 224 GYDFLGQ-NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVP 48
G + LGQ N + IP I H P+ +S LLH+ Q+ E + D +N+ YG
Sbjct: 261 GIETLGQVNDSRIPIILSHFPSATSTLNLLHWMQIFKYHELRRLDLGTARNLIAYGQKDA 320
Query: 47 PSYSLEHVSA 18
P + ++ A
Sbjct: 321 PRLEIGNIIA 330
>Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical
protein T10G3.2 protein.
Length = 346
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 284 FEIMLPVIIPTPLYLAFPFIGYDFLGQNYTNIPNIAQH 171
F +L + + +LA I + F G+NY P IA H
Sbjct: 58 FFSLLLLYYSSTTFLAIRNITFSFYGENYGKAPRIADH 95
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 125 LVNSGEFHKFDYRKQKNIKIYGTPVPPSYS 36
LV+SGEFH Y N+ ++ + V P+ S
Sbjct: 432 LVHSGEFHGGHYVTYINVNLHESAVDPTSS 461
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 125 LVNSGEFHKFDYRKQKNIKIYGTPVPPSYS 36
LV+SGEFH Y N+ ++ + V P+ S
Sbjct: 432 LVHSGEFHGGHYVTYINVNLHESAVDPTSS 461
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 125 LVNSGEFHKFDYRKQKNIKIYGTPVPPSYS 36
LV+SGEFH Y N+ ++ + V P+ S
Sbjct: 432 LVHSGEFHGGHYVTYINVNLHESAVDPTSS 461
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Frame = +3
Query: 246 KWCGNDNRKHNF--EQD 290
KW GN+ RK NF EQD
Sbjct: 13 KWAGNNKRKRNFDGEQD 29
>Z73974-8|CAA98274.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 241 WHFLLLAMTSLDRITLTYQTLLNTHLQGH 155
WHF L + L ++TL+Y L+ L H
Sbjct: 6 WHFSLFLLHLLPQLTLSYNYLVFCPLFAH 34
>Z73905-7|CAA98112.2| 526|Caenorhabditis elegans Hypothetical
protein F29F11.2 protein.
Length = 526
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 241 WHFLLLAMTSLDRITLTYQTLLNTHLQGH 155
WHF L + L ++TL+Y L+ L H
Sbjct: 6 WHFSLFLLHLLPQLTLSYNYLVFCPLFAH 34
>Z81044-12|CAB02811.2| 527|Caenorhabditis elegans Hypothetical
protein C30H6.5 protein.
Length = 527
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 68 FLCFFVYDNQIYEILRNLLIEN 133
F CF ++ N+ E N+LIEN
Sbjct: 78 FSCFVLHSNEFLEKSGNVLIEN 99
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 182 IAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPVFP 6
+AQH + + N L YF ++N + + +Q +I P P + + S FP
Sbjct: 35 MAQHETSMWNFNSLNPYFSMLNMNDGMNYARHQQNHIVTSRPPTPLTDLMSLRSFQSFP 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,015,011
Number of Sequences: 27780
Number of extensions: 132283
Number of successful extensions: 444
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -