Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B24
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    57   8e-11
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    57   8e-11
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   3.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   4.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 56.8 bits (131), Expect = 8e-11
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +2

Query: 218 MSNLADPVRVSAKDFLAGGISAAVSKTAVAPIERVKI 328
           MS LADPV   AKDFLAGG++AA+SKT VAPIERVK+
Sbjct: 1   MSGLADPVAF-AKDFLAGGVAAAISKTTVAPIERVKL 36



 Score = 29.1 bits (62), Expect = 0.018
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +1

Query: 337 QVQHVSKQIAEDPRY 381
           QVQH+SKQI+E+ RY
Sbjct: 39  QVQHISKQISEEQRY 53


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 56.8 bits (131), Expect = 8e-11
 Identities = 28/37 (75%), Positives = 32/37 (86%)
 Frame = +2

Query: 218 MSNLADPVRVSAKDFLAGGISAAVSKTAVAPIERVKI 328
           MS LADPV   AKDFLAGG++AA+SKT VAPIERVK+
Sbjct: 1   MSGLADPVAF-AKDFLAGGVAAAISKTTVAPIERVKL 36



 Score = 29.1 bits (62), Expect = 0.018
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +1

Query: 337 QVQHVSKQIAEDPRY 381
           QVQH+SKQI+E+ RY
Sbjct: 39  QVQHISKQISEEQRY 53


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 263 ESLWRKRGLDRRDSTFCSIMWSSLGGYLRTRKDFGTHGMEKP 138
           +S  R  G +  D   C+I   +     R  + + TH  EKP
Sbjct: 78  QSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKP 119


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 60  THLPLCSCDHEITPNLLIKNRGFVCSW 140
           T+ P+C  DH   P  ++     + SW
Sbjct: 154 TYTPVCEYDHTWWPYDILNCTIHIASW 180


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 365 AICLLTCWT 339
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 365 AICLLTCWT 339
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 153 RNGKTTNKRTPDF*SGD 103
           RNGKTT +      SGD
Sbjct: 382 RNGKTTEENPKSIKSGD 398


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 185 YLRTRKDFGTHGMEKPRTNEPPIFN 111
           Y +T K+     ME+ R+ EP I +
Sbjct: 281 YGKTSKERSRDRMERERSKEPKIIS 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,425
Number of Sequences: 438
Number of extensions: 2380
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)