Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B23
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...   226   2e-60
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...   109   2e-25
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...   106   2e-24
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...   104   7e-24
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    99   5e-22
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    87   1e-18
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    85   6e-18
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    48   9e-07
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    40   3e-04
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    35   0.007
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.0  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   1.3  

>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score =  226 bits (552), Expect = 2e-60
 Identities = 102/155 (65%), Positives = 127/155 (81%)
 Frame = +2

Query: 74  MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLME 253
           MF+TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+ T + VVL VEKR+TSPLME
Sbjct: 1   MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60

Query: 254 PTTIEKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLA 433
             ++EK+ E+D HI CA+SGL AD+RT++E ARV+ QNH F Y+E   +ES  Q++ +LA
Sbjct: 61  SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA 120

Query: 434 IQFGDSDDDSGTAMSRPFGVAVMFAGIDEKGPQLF 538
           ++FG+ +D     MSRPFGVA++ AGIDE GPQL+
Sbjct: 121 LRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLY 155


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  109 bits (263), Expect = 2e-25
 Identities = 57/143 (39%), Positives = 87/143 (60%)
 Frame = +2

Query: 89  SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIE 268
           S YDR ++ FSP+GRL QVEY  EA++ G+TAI +  +E +V+ VE++    L   +  +
Sbjct: 2   SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61

Query: 269 KIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGD 448
           KI  VD H+  A +GL AD+R L+++ARVE QNH     + +S+E   + V+ +  ++  
Sbjct: 62  KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQ 121

Query: 449 SDDDSGTAMSRPFGVAVMFAGID 517
           S    G    RPFGV+ + AG D
Sbjct: 122 S---GGV---RPFGVSTLIAGFD 138


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score =  106 bits (254), Expect = 2e-24
 Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
 Frame = +2

Query: 80  LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLME-P 256
           ++RS YD     FSPEGRL+QVEYA+EAI     A+GI   +G+VLA EK++TS L+E  
Sbjct: 1   MSRS-YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQE 59

Query: 257 TTIEKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAI 436
            + EK+  +  ++ CAV+GL AD+  L+  AR   Q +   +NE M  E   + V +L  
Sbjct: 60  ESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQ 119

Query: 437 QFGDSDDDSGTAMSRPFGVAVMFAGIDE-KGPQLF 538
            +      +     RPFGV+ ++AG D  +G QLF
Sbjct: 120 GY------TQYGGLRPFGVSFLYAGWDHIRGYQLF 148


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score =  104 bits (250), Expect = 7e-24
 Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
 Frame = +2

Query: 92  EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIEK 271
           +Y   + TFSP G+L Q+EYA+ A+  G T++GI  ++GVVLA EK+ TS L    ++EK
Sbjct: 4   KYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEK 63

Query: 272 IVEVDRHIACAVSGLMADSRTLVERARVECQNHW-FVYNERMSVESCAQAVSNLAIQFGD 448
           +  +   I    SG+  D R LV+++R   Q  +  +YNE    +   Q ++++     +
Sbjct: 64  VCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASV---MQE 120

Query: 449 SDDDSGTAMSRPFGVAVMFAGIDEKGPQLF 538
           S    G    RPFGV+++ AG+DEKGP L+
Sbjct: 121 STQSGGV---RPFGVSLLVAGMDEKGPSLY 147


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 98.7 bits (235), Expect = 5e-22
 Identities = 58/148 (39%), Positives = 82/148 (55%)
 Frame = +2

Query: 95  YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIEKI 274
           YD G+  FSP+GRLFQ EYA +A++  ST IGI   +GV+LA+EK +TS L++P    +I
Sbjct: 8   YDLGL-FFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRI 66

Query: 275 VEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDSD 454
             VDRHI  A +G + D + +V+RAR E  +    Y   +     A  + N    F    
Sbjct: 67  GSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLF---- 122

Query: 455 DDSGTAMSRPFGVAVMFAGIDEKGPQLF 538
             +  +  RPFGV    A  D +GP L+
Sbjct: 123 --TCYSSVRPFGVMSFVATYDSEGPHLY 148


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
 Frame = +2

Query: 95  YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGISTSEGVVLAVEKRITSPLMEPTTIEK 271
           +DR +  FSPEGRL+QVEYA +A    G T++G++      +  +K++   L++ +T++ 
Sbjct: 7   FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKH 66

Query: 272 IVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDS 451
           +  + + I C ++G +AD+R  V RAR E     +     M  +  A+ ++N+A      
Sbjct: 67  VFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA------ 120

Query: 452 DDDSGTAMSRPFGVAVMFAGIDEK-GPQLF 538
              +  A  RP GVA+    +D++ GP LF
Sbjct: 121 QVSTQRAAMRPLGVAMTLVAVDDEIGPSLF 150


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 85.0 bits (201), Expect = 6e-18
 Identities = 51/150 (34%), Positives = 80/150 (53%)
 Frame = +2

Query: 86  RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTI 265
           R++YD    T+SP+GRL QVEYA+EAIK GS  +G+ +    VL   KR    L   +  
Sbjct: 3   RNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQ 60

Query: 266 EKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFG 445
           +K++ +D HI  A++GL  D+R L    + E  +   ++   + V    + +S +A +  
Sbjct: 61  KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVR---RLMSKVAEKAQ 117

Query: 446 DSDDDSGTAMSRPFGVAVMFAGIDEKGPQL 535
            +  + G    RP+GV  +  G DE GP L
Sbjct: 118 INTQEYG---RRPYGVGFLVIGYDESGPHL 144


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 48.0 bits (109), Expect = 9e-07
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
 Frame = +2

Query: 173 GSTAIGISTSEGVVLAVEKRITS-PLMEPTTIEKIVEVDRHIACAVSGLMADSRTLVERA 349
           G+T +      G+V+ V+ R ++ PL+   T++K++E++ ++   ++G  AD +      
Sbjct: 61  GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120

Query: 350 RVECQNHWFVYNERMSVESCAQAVSNLAIQFGDSDDDSGTAMSRPFGVAVMFAGIDEKGP 529
            +EC+ H     E +SV + ++ +SN+   +       GT ++           ID  G 
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGT 180

Query: 530 QL 535
           +L
Sbjct: 181 RL 182


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +2

Query: 164 IKLGSTAIGISTSEGVVLAVEKRIT-SPLMEPTTIEKIVEVDRHIACAVSGLMADSRTLV 340
           I++G+T   +   +GV+LA + R T    +     +K+ ++  +I C  SG  AD++T+ 
Sbjct: 21  IRMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVA 80

Query: 341 ERARVECQNHWFVYNERMSVESCAQAVSNLAIQ 439
           +  +     +   +    SV + A   S +  Q
Sbjct: 81  DLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQ 113


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
 Frame = +2

Query: 158 EAIKLGSTAIGISTSEGVVLAVEKRITS-PLMEPTTIEKIVEVDRHIACAVSGLMADSRT 334
           +A   G+T +G+   + +VL  + R T+ P++     +K+  +  +I CA +G  AD+  
Sbjct: 30  KATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEF 89

Query: 335 LVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDSDDDSGTAMSRPFGVAVMFAGI 514
           +        + H    N +  V +    +     ++               G  ++  G 
Sbjct: 90  VTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRY-----------QGHIGAYLVLGGY 138

Query: 515 DEKGPQLF 538
           D KGP LF
Sbjct: 139 DCKGPHLF 146


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 31/142 (21%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
 Frame = -1

Query: 519 SSIPANMTATPNGLDIAVPLSSSLSPN*IARLDTACAQDSTLILSLYTNQ*FWHSTRARS 340
           S+IP+  ++TP+   I+ P++S LS +  + + T+ + D +  ++  ++        + S
Sbjct: 516 SAIPSTSSSTPSSSIISSPMTSVLSSS--SSIPTSSSSDFSSSITTISS-----GISSSS 568

Query: 339 TNVLESAIRPDTAQAMCRSTSTIFSIVVGSIRGDVILFSTANT-TPSDVDIPIAVEPSLI 163
                S++    + +    +ST  SI   S       FS+A+T +PS +   I+   +++
Sbjct: 569 IPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS---TFSSASTSSPSSISSSISSSSTIL 625

Query: 162 ASIAYST*NSLPSGLKVLTPRS 97
           +S   ST + + S   +++  S
Sbjct: 626 SSPTPSTSSLMISSSSIISGSS 647



 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 462 LSSSLSPN*IARLDTACAQDSTLILSLYTNQ*FWHSTRARSTNVLESAIRPDTAQAMCRS 283
           +SS+L P+  A   +     STL  SLY +     +    STN   ++    T  +   S
Sbjct: 769 ISSNL-PSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSS 827

Query: 282 TST 274
           +ST
Sbjct: 828 SST 830


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 507 ANMTATPNGLDIAVPLSSSLS-PN*IARLDTACAQDSTLIL 388
           + +TATP+ L+   PLSS  S PN I+ L T+ +  S+  L
Sbjct: 345 STLTATPSSLENLYPLSSRRSVPNLISSLGTSPSTFSSQFL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,593
Number of Sequences: 5004
Number of extensions: 43864
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)