Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B23
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 222 1e-58
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 122 2e-28
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 96 1e-20
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 92 2e-19
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 87 8e-18
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 70 9e-13
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 35 0.033
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 31 0.40
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 31 0.53
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 31 0.53
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 31 0.53
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 28 4.9
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z92825-3|CAB07311.1| 531|Caenorhabditis elegans Hypothetical pr... 27 6.5
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 222 bits (543), Expect = 1e-58
Identities = 107/155 (69%), Positives = 128/155 (82%)
Frame = +2
Query: 74 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLME 253
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEA+KLGST+IGI TSEGV+LA EKR TS LM
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMV 60
Query: 254 PTTIEKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLA 433
IEKI +VD+HI +GL+ADSRTLVERA++E QN WF YN ++ VE Q+V+NLA
Sbjct: 61 NDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA 120
Query: 434 IQFGDSDDDSGTAMSRPFGVAVMFAGIDEKGPQLF 538
+QFG DDD +MSRPFGVA++FAG+D++G +LF
Sbjct: 121 LQFG--DDDVKASMSRPFGVAMLFAGVDQEGAKLF 153
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 122 bits (294), Expect = 2e-28
Identities = 61/151 (40%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Frame = +2
Query: 89 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIE 268
+ YDR + FSP+G LFQVEYA EA+K GSTA+G+ + +V+ VEK+ L + TI
Sbjct: 2 NRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIR 61
Query: 269 KIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGD 448
KI +D H+ A +GL AD+R LV+RAR+ECQ++ + ++V ++ ++N +F
Sbjct: 62 KIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQ 121
Query: 449 SDDDSGTAMSRPFGVAVMFAGIDEKG-PQLF 538
S RPFG++++ G D G P+LF
Sbjct: 122 SPG------RRPFGISMLIGGFDHDGTPRLF 146
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 96.3 bits (229), Expect = 1e-20
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Frame = +2
Query: 95 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTI-EK 271
YD FSPEGRL+QVEYA+EAI T +GI +SEG+V+A E++ L++ + + EK
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEK 64
Query: 272 IVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDS 451
+ + +I+C V+G+ AD+ L+ R ++ Y E M VE Q V NL +
Sbjct: 65 VYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVE---QLVQNLC---NEK 118
Query: 452 DDDSGTAMSRPFGVAVMFAGIDEK-GPQLF 538
+ RPFGV++++ G D+ G QL+
Sbjct: 119 QRYTQIGGKRPFGVSLLYIGWDKHYGYQLY 148
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 92.3 bits (219), Expect = 2e-19
Identities = 49/150 (32%), Positives = 84/150 (56%)
Frame = +2
Query: 86 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTI 265
R++YD V +SP+GRL QVEYA+EA+K GS +GI + V+ KR + L
Sbjct: 3 RNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ-- 60
Query: 266 EKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFG 445
+K+ E+D H +++GL++D R L + EC + + Y + + ++ A+++ L +Q
Sbjct: 61 KKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESM-QLKLQ-- 117
Query: 446 DSDDDSGTAMSRPFGVAVMFAGIDEKGPQL 535
++ RPFGV ++ AG D+ G +
Sbjct: 118 ---ANTQYYGRRPFGVGILIAGYDKDGAHI 144
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 87.0 bits (206), Expect = 8e-18
Identities = 49/142 (34%), Positives = 77/142 (54%)
Frame = +2
Query: 95 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIEKI 274
Y + TFSP G+L Q+EYA+ A+K G ++G+ +GVVLA E + S L + K+
Sbjct: 5 YGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE-NVGSVLTDDQ--PKV 61
Query: 275 VEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDSD 454
++ +HI C SG+ D R LV++AR + +Y E M Q V+++A +
Sbjct: 62 EQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPT---IQLVTDIAAVMQEYT 118
Query: 455 DDSGTAMSRPFGVAVMFAGIDE 520
G RPFG +++ AG D+
Sbjct: 119 QSGGV---RPFGASLLIAGWDK 137
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 82.2 bits (194), Expect = 2e-16
Identities = 44/150 (29%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Frame = +2
Query: 95 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGISTSEGVVLAVEKRITSPLMEPTTIEK 271
+DR + FSPEGR++QVEYA +AI + TA+ + ++ V+AV+KR+ L+ T+
Sbjct: 9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS 68
Query: 272 IVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDS 451
+ ++ + + C G++ D++ ++RA+ E + + M E A+ +++L +
Sbjct: 69 VYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYY--- 125
Query: 452 DDDSGTAMSRPFGVAVMFAGI-DEKGPQLF 538
+ A R G A++F DEKGP+++
Sbjct: 126 ---TQNAEMRSLGCALLFISYDDEKGPEVY 152
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 70.1 bits (164), Expect = 9e-13
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Frame = +2
Query: 95 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAVEKRITSPLMEPTTIEKI 274
YD +TFSP+GR+FQVEYA +A+ T I I GVV+ +K I+S L ++
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRM 67
Query: 275 VEVDRHIACAVSGLMADSRTLVERARVECQNHWFVYNERMSVESCAQAVSNLAIQFGDSD 454
V+ ++ AV+G D L A E Y E M +++ A +V+
Sbjct: 68 FNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYI------- 120
Query: 455 DDSGTAMSRPFGVAVMFAGIDEK-GPQLF 538
+SRPFG F +++ G +LF
Sbjct: 121 HIHTLGISRPFGAGAFFMSWNKQTGGRLF 149
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 35.1 bits (77), Expect = 0.033
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +2
Query: 173 GSTAIGISTSEGVVLAVEKRITSPLMEPTTIEKIV-EVDRHIACAVSGLMADSRTLVERA 349
G T + ++ E V +A + RI + T +K V +V + ++G +D+RT++E+
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 350 RVECQNHWFVYNERMSVESCAQAVSNLAIQ 439
+ N + + ++ +SNLA Q
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQ 97
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 31.5 bits (68), Expect = 0.40
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +2
Query: 149 YAIEAIKLGSTAIGISTSEGVVLAVEKRITS-PLMEPTTIEKIVEVDRHIACAVSGLMAD 325
Y E I G+T I + + GVV+ + R ++ + KI + ++ SG AD
Sbjct: 15 YPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAAD 74
Query: 326 SRTLVERARVECQNHWFVYNERMSVESCAQ 415
++ + + A+ + N+ +++ +Q
Sbjct: 75 TQAIADIAKYHIDVYTMTENKPVTIYRSSQ 104
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.53
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +2
Query: 206 GVVLAVEKRITS-PLMEPTTIEKIVEVDRHIACAVSGLMADSRTLVERARVECQNHWFVY 382
G+++AV+ R +S + ++ KI+++ + ++G AD + C +
Sbjct: 82 GIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELRE 141
Query: 383 NERMSVESCAQAVSNLAIQFGDSDDDSGTAMSRPFGVAVMFAGIDEKGPQLF 538
++V + ++ +N + G +S V M AG D+KGPQ+F
Sbjct: 142 KTSITVSAASKYFANTLYGY------RGQGLS----VGSMVAGYDKKGPQIF 183
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 31.1 bits (67), Expect = 0.53
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 173 GSTAIGISTSEGVVLAVEKRITSPLMEPTT--IEKIVEVDRHIACAVSGLMADSRTLVER 346
G + IS ++A + R+T + T EKI ++ +I SG D L +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 347 ARVECQNHWFVYNERMSVESCAQAVS 424
+ + F Y MSV+ CA+ +S
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLS 136
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 31.1 bits (67), Expect = 0.53
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 173 GSTAIGISTSEGVVLAVEKRITSPLMEPTT--IEKIVEVDRHIACAVSGLMADSRTLVER 346
G + IS ++A + R+T + T EKI ++ +I SG D L +
Sbjct: 51 GGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKV 110
Query: 347 ARVECQNHWFVYNERMSVESCAQAVS 424
+ + F Y MSV+ CA+ +S
Sbjct: 111 LQSRLHKYRFDYRSDMSVDLCAELLS 136
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 17 KVNRN*SNSYSFINLEVFKMFLTRSEYDRGVNTFSPEGRLFQV 145
K+ +N N++ +++FKMF+ R+ +D+ PE +F+V
Sbjct: 297 KIGKNLQNNFEMWAIKIFKMFMGRNIFDQQ----DPEITIFKV 335
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 17 KVNRN*SNSYSFINLEVFKMFLTRSEYDRGVNTFSPEGRLFQV 145
K+ +N N++ +++FKMF+ R+ +D+ PE +F+V
Sbjct: 307 KIGKNLQNNFEMWAIKIFKMFMGRNIFDQQ----DPEITIFKV 345
>Z92825-3|CAB07311.1| 531|Caenorhabditis elegans Hypothetical
protein C13C4.5 protein.
Length = 531
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 333 VLESAIR--PDTAQAMCRSTSTIFSIVVGSIRGDVILFSTANTT 208
++ AIR DTAQA +S T F + VG++ VILF + T
Sbjct: 444 LISDAIRGNEDTAQAHYKSLVTSFWLCVGTLVLSVILFGISAIT 487
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,929,954
Number of Sequences: 27780
Number of extensions: 251983
Number of successful extensions: 801
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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