Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B23
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.65 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 525 PFSSIPANMTATPNGLDIAVPLSSSL 448
           P SS P +   +P+ LD+A+P+  +L
Sbjct: 437 PPSSNPVSPVPSPDPLDLAIPVRETL 462


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +1

Query: 466 DCYVKTVWCSSHVCW 510
           +C+V  +W   H+ W
Sbjct: 55  NCWVTQIWTDHHLKW 69


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 461 YHHHCHQTE 435
           +HHH HQT+
Sbjct: 351 HHHHHHQTQ 359


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 132 LPSGLKVLTPRSYSERV 82
           L SG+   TPRS+S RV
Sbjct: 622 LNSGIGEGTPRSFSARV 638


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,439
Number of Sequences: 438
Number of extensions: 2907
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)