Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B22
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...   108   5e-25
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    31   0.085
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    30   0.26 
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    29   0.34 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   0.60 
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    29   0.60 
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    27   1.8  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   3.2  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   4.2  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   5.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.4  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   7.4  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   9.8  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   9.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score =  108 bits (260), Expect = 5e-25
 Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
 Frame = +3

Query: 36  FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRL 215
           F RYVE GRV LV+ G   GKL  +VDI+D  RALID P S   RQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 216 KYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFK-LTSARVKRNR 392
           K P  A + +V K W    +  KWA S WA+KL  K+ R+Q+ D+DRF  +   + +R +
Sbjct: 64  KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123

Query: 393 ARTAVFKSLK 422
              AV K+LK
Sbjct: 124 VNVAVAKALK 133


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 194  ELVEANLLPRNTTAGTVNKCACLINDINYANQL 96
            E+ E+ LLP + T GTV   AC I D + A +L
Sbjct: 951  EMKESGLLPTSVTYGTVINAACRIGDESLAEKL 983


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 526 FFAGFCLLGFFVRSFLTALLGILLLPKTPARAAFTFKLLNTAVLARFLLTR 374
           +F  + +   F+ SFL    G+ +   +     F F +  TA+L+ FL+ R
Sbjct: 362 YFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKR 412


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 42  RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 128
           + ++PG+VAL++ G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 42  RYVEPGRVALVSDGPLKGKLVGVVDIIDQ 128
           + ++PG+VALV+ G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 160 PLPGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEPHLV 2
           P+ G SI   +    S +P N     PSET+   P    R K +T  Q+P  V
Sbjct: 18  PVWGKSIYGPLRRRFSFSPINVINHSPSETKRRDPVEELRYKPLTPPQDPRKV 70


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 366 TSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSA 476
           T     +NR  T+ F     + A AG+FG+S  P  +
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGS 196


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 460 KSPKAQLKSYARRNP-TGKNQQRSNSFVP 543
           K+ KAQL+S A++NP      Q S SF P
Sbjct: 446 KARKAQLQSMAQKNPLAASGLQSSLSFTP 474


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 21  EDVMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALID 146
           +D   F +Y+  G++ L +D P K   +G +       ++ D
Sbjct: 15  DDKFEFKKYINEGKLPLKADNPKKKPQLGTIQANQPIPSIFD 56


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +2

Query: 359 QADVGPC*EESCKNSSV*KLEGESGARWCLRQK*NPQKRS*KATHEETQQAKTSKEVILL 538
           Q+D  P   E+C    + K   +S A W + Q  NP      AT +     K  K V +L
Sbjct: 257 QSDFVPSVSENCTPLELLKTVFQSPAPWDVHQLYNPDSLDVFATTDTLGLIKVGKNVPIL 316


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 252 KAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKA 431
           +A  + +  E+  +++  +KLA +EKR +  +    K    R+++ RA+ A  K +  ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRES 765

Query: 432 ARA 440
           A A
Sbjct: 766 AHA 768


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 60  RVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS-----GVSRQQIRLNQLHLTKF 209
           ++ + SDG  + K +G++DI+ Q   L D   +     G   Q++ + + H+ +F
Sbjct: 182 QLPVYSDGLQERKFLGILDILQQKMILWDTSDNKLGTDGTHVQELPIPESHMERF 236


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 513 FACWVSSCVAF*LRFWGFY 457
           FA W +SC+   +  W FY
Sbjct: 140 FAVWCASCLMIFISLWYFY 158


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +3

Query: 321 KEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSAVK---KLR 491
           +EKRA+  +  R +   AR+     R A  +  + + AR     K +  K  +K   K  
Sbjct: 255 EEKRAREEEEQRIREEEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYL 314

Query: 492 TKKPNRQK 515
           +KK   Q+
Sbjct: 315 SKKQKEQQ 322


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 173 TNSPQPTPFNKIPPK 217
           T +P+P+P+  +PPK
Sbjct: 619 TTAPKPSPWKSLPPK 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,488
Number of Sequences: 5004
Number of extensions: 41929
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)