Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B22
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 103 7e-23
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 100 2e-21
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 28 4.3
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 28 4.3
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 28 5.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 27 7.5
08_01_0680 - 5958066-5960253,5960707-5961503 27 10.0
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 27 10.0
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 103 bits (248), Expect = 7e-23
Identities = 55/135 (40%), Positives = 78/135 (57%)
Frame = +3
Query: 30 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 209
MPF R+VE GRVALV+ G G+LV +VD++DQ RAL+D P + R QI +L LT
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58
Query: 210 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 389
++ + KA +A + KW S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118
Query: 390 RARTAVFKSLKVKAA 434
A LK AA
Sbjct: 119 GAIRQELAKLKKTAA 133
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 99.5 bits (237), Expect = 2e-21
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 5/129 (3%)
Frame = +3
Query: 12 GSCEDVMP-----FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQ 176
GSC +++P F R+VE GRVALV+ G G+LV +VD++DQ RAL+D P + R Q
Sbjct: 3 GSCREILPVVSSPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQ 60
Query: 177 IRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDR 356
I +L LT ++ + KA +A + KW S W +KL +++RA + D+DR
Sbjct: 61 INFKRLSLTDIKIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDR 120
Query: 357 FKLTSARVK 383
FK+ A++K
Sbjct: 121 FKVMLAKIK 129
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = -1
Query: 508 LLGFFVRSFLTALLGILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICAL 329
++ + R+F ++L A FK+L + R L ++NL S++C +
Sbjct: 322 IVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVCVM 381
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 439 ARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLAHF 281
A A+F K+ N ++A + D L ++ L S+ NFC+ LA+F
Sbjct: 124 AAASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYF 176
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 262 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 179
+H T+R+G + +FR V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 54 PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 158
P VA +DG L ++G V ID L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 466 GILLLPKTPARAAFTFKLLNTAVLARFLLTRADVSLNLS*SVICALFSLFANFCAHWLLA 287
G L+ + R +FT ++ L +L L SV+ LF L+A +W L
Sbjct: 930 GSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCISVLSLLFWLYAYLAEYWKLF 989
Query: 286 HF 281
HF
Sbjct: 990 HF 991
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +3
Query: 291 KSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPK 470
K ++ A A +R + A VK R R KSL+ KAA V G K+ +
Sbjct: 328 KKDGVKQSAKVANGASAETSERVDGSPAMVKSKRGRPPGLKSLEKKAAGKKVLGLKKVEE 387
Query: 471 SAVKKLRTKKPNRQKPAK 524
+ + K + + +K
Sbjct: 388 TTDSTGKLSKQSSKDDSK 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,658
Number of Sequences: 37544
Number of extensions: 282200
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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