Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B22
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 104 5e-23
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 42 4e-04
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 42 4e-04
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 31 0.42
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 31 0.42
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 31 0.42
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 31 0.42
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 31 0.42
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 31 0.42
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 31 0.73
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 30 0.96
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 29 2.2
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z82287-1|CAB05316.1| 366|Caenorhabditis elegans Hypothetical pr... 29 2.9
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 28 3.9
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 28 3.9
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 28 5.1
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein. 28 5.1
AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical... 28 5.1
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 27 6.8
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 27 6.8
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 104 bits (249), Expect = 5e-23
Identities = 54/131 (41%), Positives = 78/131 (59%)
Frame = +3
Query: 30 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 209
M F R V+ GRV ++ G +GKL +V++ID R IDGP S V+R L L LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 210 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 389
LK T+ V+ A+ A++ E + K+QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 390 RARTAVFKSLK 422
R LK
Sbjct: 121 RIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 41.5 bits (93), Expect = 4e-04
Identities = 31/87 (35%), Positives = 42/87 (48%)
Frame = +3
Query: 267 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 446
A EK AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVA---- 182
Query: 447 FGKSKIPKSAVKKLRTKKPNRQKPAKK 527
KS KSA KK KP ++ A K
Sbjct: 183 --KSPAKKSAPKKAAAAKPAKKAVAPK 207
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 41.5 bits (93), Expect = 4e-04
Identities = 31/87 (35%), Positives = 42/87 (48%)
Frame = +3
Query: 267 AQLNEKWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 446
A EK AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVA---- 182
Query: 447 FGKSKIPKSAVKKLRTKKPNRQKPAKK 527
KS KSA KK KP ++ A K
Sbjct: 183 --KSPAKKSAPKKAAAAKPAKKAVAPK 207
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 150 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 326
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 327 KRAQMTDYD 353
+ + D
Sbjct: 89 SKFNLFGSD 97
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 150 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 326
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 73 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 129
Query: 327 KRAQMTDYD 353
+ + D
Sbjct: 130 SKFNLFGSD 138
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 150 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 326
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 327 KRAQMTDYD 353
+ + D
Sbjct: 159 SKFNLFGSD 167
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 150 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 326
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 327 KRAQMTDYD 353
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 150 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 326
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 32 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 88
Query: 327 KRAQMTDYD 353
+ + D
Sbjct: 89 SKFNLFGSD 97
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 150 PGSGVSRQQIRLNQLHLTKFRLKYPFTAP-TRVVRKAWTDAQLNEKWAKSQWAQKLANKE 326
P R++++ LH K +K PF + R+ R AW A L +W + +WA+ + + E
Sbjct: 102 PSKRTVRRRLQQAGLHGRK-PVKKPFISKKNRMARVAWAKAHL--RWGRQEWAKHIWSDE 158
Query: 327 KRAQMTDYD 353
+ + D
Sbjct: 159 SKFNLFGSD 167
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 291 KSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAAR 437
++QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 30.3 bits (65), Expect = 0.96
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 151 GPSISARV*---SMISTTPTNFPFRGPSETRATRPGS 50
GPS S+ V SMI+TTP PF P+ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 154 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 11
PGPS +++ S I TPT P + A +P + G+ +SQ+P
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQP 1479
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 154 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 11
PGPS +++ S I TPT P + A +P + G+ +SQ+P
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQP 1479
>Z82287-1|CAB05316.1| 366|Caenorhabditis elegans Hypothetical
protein ZK550.1 protein.
Length = 366
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 529 YFFAGFCLLGFFVRSFLTALLGILLLPKTPARAAFTFKL 413
YF G + FF+ F + LL I +LPK +A F+F +
Sbjct: 77 YFCYGNEIAHFFINGFGSYLLMISVLPKHVHKAVFSFAM 115
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 276 NEKWAKSQWAQKLANKEKRAQMTDYDRFK 362
N KW + A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 200 NKIP-PKIPFYSTHTCCQKSVDRR 268
N+ P P P+YST T C K+V RR
Sbjct: 53 NRSPSPHEPYYSTRTRCSKNVRRR 76
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 454 KVKSPKAQLKSYARRNPTGKNQQRSNS 534
+V SP AQ SYARRN ++ +S S
Sbjct: 1260 RVNSPPAQSTSYARRNDGKRHPSKSRS 1286
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 123 DQTRALI-DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQ 299
DQ A++ +G G + R ++ +K +LK TAP V + WT + A S
Sbjct: 1033 DQAAAMMNEGKGQKIKNMLRRNSRRDKSKSKLKIESTAPAAVNPRGWTQPTPSNTSAASV 1092
Query: 300 WAQKLANKEKR 332
+ N ++R
Sbjct: 1093 ESAFCGNYQER 1103
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical protein
C04D8.1 protein.
Length = 1317
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 123 DQTRALI-DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQ 299
DQ A++ +G G + R ++ +K +LK TAP V + WT + A S
Sbjct: 911 DQAAAMMNEGKGQKIKNMLRRNSRRDKSKSKLKIESTAPAAVNPRGWTQPTPSNTSAASV 970
Query: 300 WAQKLANKEKR 332
+ N ++R
Sbjct: 971 ESAFCGNYQER 981
>AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein.
Length = 213
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -1
Query: 547 FLAQKNYFFAGFCLLGFFVRSFLTALLGILLLPKTPARAAFTFKLLNTAVLARFLLTRAD 368
F AQ+N + +GF LL + V + LLG + + AA + + AR L+ AD
Sbjct: 95 FRAQRNLYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMR-QAESATKTARTLMNSAD 153
Query: 367 VS 362
+
Sbjct: 154 TN 155
>AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical
protein Y54G2A.18 protein.
Length = 213
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -1
Query: 547 FLAQKNYFFAGFCLLGFFVRSFLTALLGILLLPKTPARAAFTFKLLNTAVLARFLLTRAD 368
F AQ+N + +GF LL + V + LLG + + AA + + AR L+ AD
Sbjct: 95 FRAQRNLYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMR-QAESATKTARTLMNSAD 153
Query: 367 VS 362
+
Sbjct: 154 TN 155
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 306 QKLANKEKRAQMTDYDRFKLTSARVKR-NRARTAVFKSLKVKAARAGVFGKSKIPK-SAV 479
Q+ K + + D +R + +K N+A+T VK A V +S+ PK S V
Sbjct: 5 QRAKIKPVKEVLDDSERNSVNDLAIKPINKAKTTTRSGRVVKKTPATVEWESQSPKKSTV 64
Query: 480 KKLRTKKPNRQK 515
K PN++K
Sbjct: 65 KSNNVTTPNQKK 76
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = -1
Query: 343 VICALFSLFANFCAHWLLAHFSFS*ASVHAFLTTRVGAVKGYFRRNFVKWSWLRRICCRE 164
+I + S F +H L AH + + V A + G VK Y + + + + R +CC
Sbjct: 318 IIGWVLSKFLTRVSH-LQAHLNLAYDKV-AEMRAEAGKVKNYTIQAMI-YRYYRYLCCAA 374
Query: 163 TPLPGPSISARV*SMISTTPTNFPFRG 83
GP++ A + +++ T N + G
Sbjct: 375 LQYFGPAVLALLFALLLKTTGNLSWIG 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,527
Number of Sequences: 27780
Number of extensions: 247011
Number of successful extensions: 808
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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