Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B22
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 RQQIRLNQLHLTKFRLKYPFTAPTRVVRK 254
           R+ I +N LH   + L YPF    R+V K
Sbjct: 200 REDIGIN-LHHWHWHLVYPFEGDIRIVNK 227


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +3

Query: 336 QMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGVFGKSKIPKSAVKKLRTKKP--NR 509
           Q+    + K     + RN+A   V K   V   ++    K   PK   K   T +P  + 
Sbjct: 748 QLQGVAKNKKNVGSMSRNKALLPVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISS 807

Query: 510 QKPAKK 527
           +K  KK
Sbjct: 808 RKEQKK 813


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 534 RITSLLVFACWVSSCVAF*LRFWGFYFCR 448
           R +S+L     VSSCV F + F  F F R
Sbjct: 2   RASSVLQAESDVSSCVIFGVLFVLFSFLR 30


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 534 RITSLLVFACWVSSCVAF*LRFWGFYFCR 448
           R +S+L     VSSCV F + F  F F R
Sbjct: 2   RASSVLQAESDVSSCVIFGVLFVLFSFLR 30


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = +2

Query: 161 CFAATNSPQPTPFN---KIPPKIPFYSTHTCCQKSVD 262
           CFA  +   P       ++PP  P Y  +  C   +D
Sbjct: 447 CFAQDDGLCPYTLKHKIRVPPGTPIYECNKRCNCDID 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,840
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)