Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B18
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    31   0.18 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   3.8  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    26   5.0  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   8.8  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.8  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.8  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    25   8.8  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +1

Query: 175 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNY 348
           GG L  V G   S   +LGD+K  R K S A+ +   +P     +F + ++G+ +S  + 
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIPHIRQEEFAK-LNGIHYSLQDL 226

Query: 349 LKLDGGKRKQFLQTAA 396
           +  D G+R   ++ A+
Sbjct: 227 MGHDHGERPSHVKDAS 242


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 214 SVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTN 345
           ++L   DK++  E + LR    +  +  +  +QT++ + F ST+
Sbjct: 59  NILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTS 102


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 447 CAFQH*LFPRHLLHDSVRCSLQELLSLA---SV*FQVVRRRKYETVDR 313
           C FQ   FP HLL + +R S +E  S A   S    + R +K  T+ +
Sbjct: 224 CLFQVRPFPNHLLINWIRASEEEKASSADRLSSALHISRDKKLTTISK 271


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 245 LKNQKRSEQR*NSHLTPALISFRRSTVSYFXXXXXXXXXEARESSSCRLQRTL 403
           LKNQKRSE+R    +T  +I   +  +  F         EA    S  L+  L
Sbjct: 738 LKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKL 790


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 319 DGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLVLECTCTYV 459
           D  + S+ N L L+ G  KQFL+ AA  ++         +  T +YV
Sbjct: 672 DAFIESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYV 718


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 577 SRVITDMIEASSFFYTLTFVCEQ 509
           S  I +++    F YTL++VCEQ
Sbjct: 827 SDFIKELLYRRPFSYTLSYVCEQ 849


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 166 LKCGGNLAHVVGFDESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 321
           +K G  + + +GF    V   G     K+ EA  ATL+   +  I+F+ T D
Sbjct: 18  VKVGDMVVNRMGFGAMRVTGDGIWDEPKDKEACIATLKRLPELNINFIDTAD 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,549
Number of Sequences: 5004
Number of extensions: 41124
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)