Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B18
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X92669-1|CAA63356.1|  309|Homo sapiens p35 protein.                    32   1.9  
X87843-1|CAA61112.1|  309|Homo sapiens cdk7/cyclin H assembly fa...    32   1.9  
U61835-1|AAB05248.1|  267|Homo sapiens cyclin G1 interacting pro...    32   1.9  
CR450336-1|CAG29332.1|  309|Homo sapiens MNAT1 protein.                32   1.9  
BC000820-1|AAH00820.1|  309|Homo sapiens menage a trois homolog ...    32   1.9  
AY165512-1|AAN47195.1|  309|Homo sapiens menage a trois 1 (CAK a...    32   1.9  

>X92669-1|CAA63356.1|  309|Homo sapiens p35 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 301 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 441
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>X87843-1|CAA61112.1|  309|Homo sapiens cdk7/cyclin H assembly
           factor protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 301 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 441
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>U61835-1|AAB05248.1|  267|Homo sapiens cyclin G1 interacting
           protein protein.
          Length = 267

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 301 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 441
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>CR450336-1|CAG29332.1|  309|Homo sapiens MNAT1 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 301 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 441
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>BC000820-1|AAH00820.1|  309|Homo sapiens menage a trois homolog 1,
           cyclin H assembly factor (Xenopus laevis) protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 301 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 441
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


>AY165512-1|AAN47195.1|  309|Homo sapiens menage a trois 1 (CAK
           assembly factor) protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +1

Query: 301 DFVQTVDGLVFSSTNYLKLDGGKRK-QFLQTAAHAIMQ----KMTREQLVLE 441
           DF++ V+ +VF+ TN + LD  K+K +  Q     ++Q    K+TREQ  LE
Sbjct: 97  DFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELE 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,797,939
Number of Sequences: 237096
Number of extensions: 1414502
Number of successful extensions: 3656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3656
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)