Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B18
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    32   0.38 
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical p...    28   6.1  
U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 336 VDELLETRRRQEKAVPADCSARYHAEDDEGTT 431
           +DE+++  R  EK +P  C+ R HA   +GT+
Sbjct: 673 IDEIIKNSRGYEKLIPPSCTFRAHASPWKGTS 704


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 527 YFRLRATSFLSFVKQA--ERTRNGSTYVHVHSSTSCSLVIFCMIACAAV 387
           Y    +T F S  K    E  RNG   +     TS  LV+FCM AC+++
Sbjct: 238 YKETNSTIFWSSSKSLAKEMERNGELLIPWMPWTSLVLVVFCMFACSSL 286


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 305 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 186
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 305 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 186
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 318 RRSRIFVDELLETRRRQEKAVPADCSARYHAEDDE 422
           RR RI+ DE LE     EK  PA  S++  A+DD+
Sbjct: 85  RRKRIYDDEYLEGGSDDEK--PASSSSKLAADDDD 117


>Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical
           protein R07B5.8b protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 247 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 411
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 428 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 487

Query: 412 KMT 420
           K T
Sbjct: 488 KAT 490


>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 247 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 411
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 473 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 532

Query: 412 KMT 420
           K T
Sbjct: 533 KAT 535


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical protein
            F56G4.1 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 551  GLFILLYTYFRLRATSF--LSFVKQAERTRNGSTYVHVHSSTSCSLVIFCMI 402
            G F+ LYT  ++R + F  +S         + ST V +     CSL+I C+I
Sbjct: 861  GCFLFLYTTLQVRFSYFYKISVDGTTSILTSKSTRVFLKKWFECSLLIICLI 912


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical protein
            F56G4.1 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 551  GLFILLYTYFRLRATSF--LSFVKQAERTRNGSTYVHVHSSTSCSLVIFCMI 402
            G F+ LYT  ++R + F  +S         + ST V +     CSL+I C+I
Sbjct: 861  GCFLFLYTTLQVRFSYFYKISVDGTTSILTSKSTRVFLKKWFECSLLIICLI 912


>Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.13 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 208 ESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 321
           E SV M G++  TK   A+     +  DSCID+ +  D
Sbjct: 248 EMSVKMFGNQVLTKRKFAISNEKLMVMDSCIDYSEITD 285


>U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical
           protein F20B6.5 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -2

Query: 485 QAERTRNGSTYVHVHSSTSCSLV---IFCMIACAAVCRNCFL 369
           Q +  R+ +T  H+H  T+C  V   I CMI        C+L
Sbjct: 274 QGQMIRSMNTLAHLHKCTTCQTVAQKIDCMILSLKTYIGCYL 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,683,257
Number of Sequences: 27780
Number of extensions: 239767
Number of successful extensions: 744
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)