Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B17
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   1.8  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   5.5  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   7.3  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 16  RLGAPPPARVAPSPLVYSIRSLLMRVVTLLFILPSHGCMIFYILN 150
           R+G+P P ++   P+VY    LLM     +  +    C++F ++N
Sbjct: 117 RIGSPHPKKL---PVVYCHHGLLMNSEVWVCNVDPRNCLVFDLVN 158


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 145 LNCFCNDDVGYDF 183
           L CF NDD+ Y+F
Sbjct: 326 LRCFFNDDISYNF 338


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 445 PYRLNRTLSIHYLFNY 398
           PYR NR+L +H  F Y
Sbjct: 178 PYRFNRSLRVHSKFVY 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,249
Number of Sequences: 5004
Number of extensions: 30916
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)