Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B17
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0350 + 16899076-16900164 28 4.1
08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108 28 4.1
11_05_0059 - 18724619-18725053 27 5.4
09_04_0416 - 17399059-17399777,17400560-17400704 27 5.4
07_03_0326 - 16815736-16816257 27 5.4
06_01_0129 + 1009097-1009681 27 5.4
02_05_0192 + 26602247-26602617,26602701-26603016 27 5.4
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040... 27 5.4
12_02_0046 + 12830974-12832386 27 7.2
06_03_0854 + 25400855-25403741,25406174-25407708 27 7.2
06_01_0198 + 1529190-1530371 27 7.2
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 27 9.5
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 4.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 60 EWRRRYSCWWWR 25
EWR+R CW WR
Sbjct: 254 EWRQRSGCWQWR 265
>08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108
Length = 316
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 125 PCEGRIKSNVTTRINNDLIEYTSGDGATRAGGGAPSRGTV 6
P G SNV I +L E G GGAP +G V
Sbjct: 242 PSSGGENSNVVVAIEAELQELLYAGGGAIVDGGAPPQGDV 281
>11_05_0059 - 18724619-18725053
Length = 144
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 54 RRRYSCWWWRAESR 13
RRR+ CWW R SR
Sbjct: 25 RRRHCCWWSRGRSR 38
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 13 PRLGAPPPARVAPSP 57
P L APPP R APSP
Sbjct: 223 PDLAAPPPLRPAPSP 237
>07_03_0326 - 16815736-16816257
Length = 173
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 10 VPRLGA-PPPARVAPSPLVYSIRSLLMRVVTLLFIL 114
VPR PPP R PSP+ S L R++ LF L
Sbjct: 48 VPRGSTQPPPTRERPSPMARREPSPLFRILRSLFDL 83
>06_01_0129 + 1009097-1009681
Length = 194
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = -1
Query: 57 WRRRY-SCWWWRAESR 13
WRRR + WWWRA ++
Sbjct: 125 WRRRLLAAWWWRATAQ 140
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = -1
Query: 57 WRRRY-SCWWWRAESR 13
WRRR + WWWRA ++
Sbjct: 76 WRRRLLAAWWWRATAQ 91
>01_07_0031 -
40603243-40603491,40603617-40603799,40603896-40604084,
40604244-40604916,40605583-40605737
Length = 482
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 1 TGTVPRLGAPPPARVAPSPLVYSIRSLLM 87
TG V +L AP PA AP P S+RS +
Sbjct: 2 TGAVSKLAAPRPAAAAPLPPA-SVRSAFL 29
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 25 APPPARVAPSPLVYSIRS 78
APPP RVAP P S+R+
Sbjct: 235 APPPRRVAPQPAPPSLRT 252
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 1 TGTVPRLGAPPPARVAPSPLVYSIRSL 81
T V +GAPPP AP+P S SL
Sbjct: 606 TPAVVTVGAPPPPSAAPAPAPASAPSL 632
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 34 PARVAPSPLVYSIRSLLMRVVTLLFILPSHGCMIFYILNCFCNDD 168
P V PS L+Y++ +L + VT L LPS ++ Y L+ + + D
Sbjct: 8 PVPVPPS-LLYAVAALALAAVTHLLHLPS---LLLYALHTYIHPD 48
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 28 PPPARVAPSPLVYSIRSLLMRVVTLL-FILPSHGCMIFYILNCFC 159
PPP PSP S R+ T+L ++P+ ++ ++ CFC
Sbjct: 277 PPPP---PSPSATSGEKTKNRIGTVLAIVMPAIAAILLMVVACFC 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,188,566
Number of Sequences: 37544
Number of extensions: 176373
Number of successful extensions: 684
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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