Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B16
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 58 9e-10
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 53 3e-08
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 53 3e-08
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 52 3e-08
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 44 1e-05
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 42 5e-05
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 42 6e-05
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 33 0.017
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 29 0.36
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 28 0.83
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 1.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 3.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 3.4
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 25 7.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 7.8
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 57.6 bits (133), Expect = 9e-10
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Frame = +3
Query: 9 LLLNGVGDINVTALVSYTSFNDESGEPSERLARFKRWLWAIVDKMTHLERQDLVYFWTGS 188
LL+ G+ +I++ +T + S + +W W ++D+ ++ ++ L+ F TG+
Sbjct: 644 LLIGGISEIDMEDWKKHTDYRSYSEND-----QIIKWFWELMDEWSNEKKSRLLQFTTGT 698
Query: 189 PALPASE----EGFQPMPSVTIRPADDAH-LPTANTCISRLYIPLYSSRHVLKHKLLLAI 353
+P + +G TI A + + LP A+TC +RL +P Y+S+ L HKL +A+
Sbjct: 699 SRIPVNGFKDLQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLSIAV 758
Query: 354 -KTKNFG 371
+T FG
Sbjct: 759 EETIGFG 765
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 52.8 bits (121), Expect = 3e-08
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Frame = +3
Query: 12 LLNGVGDINVTALVSYTSFNDESGEPSERLARFKRWLWAIVDKMTHLERQDLVYFWTGSP 191
LLNG DI+V +T + + E + + W W ++ + + ++ L+ F TG+
Sbjct: 549 LLNGKRDIDVQDWKRFTDYRSYT-ETDDIVI----WFWELLSEWSPEKKAKLLQFATGTS 603
Query: 192 ALPASEEGFQPMPS------VTIRPADD-AHLPTANTCISRLYIPLYSSRHVLKHKLLLA 350
LP S GF+ M TI + LP A+TC +RL IP Y+S+ L+ KL +A
Sbjct: 604 RLPLS--GFKDMHGSDGPRKFTIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIA 661
Query: 351 I-KTKNFG 371
I +T FG
Sbjct: 662 IQETAGFG 669
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 52.8 bits (121), Expect = 3e-08
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Frame = +3
Query: 9 LLLNGVGDINVTALVSYTSFNDESGEPSERLARFKRWLWAIVDKMTHLERQDLVYFWTGS 188
LL+ G+ D++V S+T + +W W I+ + +R L+ F TG+
Sbjct: 663 LLIGGISDVDVEDWKSHTEYRTYIATDP-----VIKWFWEIIAGWKNEDRSKLLQFATGT 717
Query: 189 PALPASE----EGFQPMPSVTIRPADDA-HLPTANTCISRLYIPLYSSRHVLKHKLLLAI 353
+P + +G TI A LP A+TC +RL +P Y S+ L KL LA+
Sbjct: 718 SRIPVNGFRDLQGSDGPRKFTIEKAGTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAV 777
Query: 354 K-TKNFG 371
+ T FG
Sbjct: 778 ENTVGFG 784
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 52.4 bits (120), Expect = 3e-08
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Frame = +3
Query: 123 WAIVDKMTHLERQDLVYFWTGSPALPASEEGFQP-MPSVTIRP--ADDAHLPTANTCISR 293
W ++ + +++ V F T P GF+ MPS IR D+ LPTA+TC++
Sbjct: 943 WEVLREFEEEDKRSFVKFVTSVARPPIL--GFKALMPSFCIRVNGEDETRLPTASTCVNL 1000
Query: 294 LYIPLYSSRHVLKHKLLLAIKT-KNFGF 374
L +P+YS++ L+ KLL A+++ FGF
Sbjct: 1001 LKLPMYSTKQTLRDKLLTAVRSGVGFGF 1028
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 44.0 bits (99), Expect = 1e-05
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +3
Query: 117 WLWAIVDKMTHLERQDLVYFWTGSPALPAS-EEGFQPMPSVTIRPADDAHLPTANTCISR 293
W W ++ + ++ + F TGS +PA+ FQ SV + P D LP ++TC +
Sbjct: 721 WFWDLISHYSLKMQKLFLIFVTGSDRIPATGAHNFQLRISV-LGPDSD-QLPISHTCFNH 778
Query: 294 LYIPLYSSRHVLKHKLLLAIKTKNFGF 374
L I YSSR LK KL A+ N GF
Sbjct: 779 LCIWEYSSREKLKKKLDTALLETN-GF 804
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 41.9 bits (94), Expect = 5e-05
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +3
Query: 120 LWAIVDKMTHLERQDLVYFWTGSPALPASE-EGFQPMPSVTIRPAD-----DAHLPTANT 281
L ++ +M E++D + F TGS LP G P +V R + D +LP+ T
Sbjct: 1554 LLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNEPPYVPDDYLPSVMT 1613
Query: 282 CISRLYIPLYSSRHVLKHKLLLAI 353
C++ L +P YSS VL +L AI
Sbjct: 1614 CVNYLKLPEYSSSEVLGSRLSKAI 1637
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 41.5 bits (93), Expect = 6e-05
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Frame = +3
Query: 9 LLLNGVGDINVTALVSYTSFNDESGEPSERLARFKRWLWAIVDKMTHLERQDLVYFWTGS 188
LL++G+ +I++ + T ++ + + +W W V ER L+ F TG+
Sbjct: 3102 LLISGLPEIDIDDWKNNTEYHGYNVSSPQ-----VQWFWRAVRSFDEEERAKLLQFATGT 3156
Query: 189 PALPASE----EGFQPMPSVTIRPADDA--HLPTANTCISRLYIPLYSSRHVLKHKLLLA 350
+P + EG I + + LP ++TC ++L +P Y + L+ LL A
Sbjct: 3157 SKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDTYEQLRSMLLTA 3216
Query: 351 IKTKNFGF 374
I + GF
Sbjct: 3217 INEGSEGF 3224
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 33.5 bits (73), Expect = 0.017
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 117 WLWAIVDKMTHLERQDLVYFWTGSPALPASEEGFQP-----MPSVTIRPADDAHLPTANT 281
WLW ++D L L F GSP L + P +P + RP AH+P N
Sbjct: 170 WLWIVIDDYNRLNL--LRTFQAGSPYLWTRWQSNDPHLISSVPDYSARPRKYAHVPILNL 227
Query: 282 CI 287
C+
Sbjct: 228 CL 229
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.36
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 87 PSERLARFKRWLWAIVDKMTHLERQDLVYFWTGS 188
P++ RF+ W++ I++KM E++ L WT S
Sbjct: 163 PNDNYCRFEEWIFPILNKMVE-EQETLGTHWTPS 195
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 27.9 bits (59), Expect = 0.83
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = -1
Query: 237 SLKALAEIPLQKQARLATRSRNKPSLVFRDVSSYQLWPTTTS*NGRVALKVPHFH 73
++ A P+ + T+SR+ PS++F+++ S ++ +L + +FH
Sbjct: 162 NIGAFRTYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPITYFH 216
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 355 KLRTLVSSKFKSVILSLSFFKPSHGRLPLYSIDIDL 462
KLRT++S++ K L L F + L + D+D+
Sbjct: 74 KLRTILSTEIKDAKLDLFVFGSTENNLAIQQSDVDV 109
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +3
Query: 183 GSPALPASEEGFQPMPS---VTIRP-ADDAHLPTANTCISRLYIPLYSSRH 323
G+ +P + G P+ S V+++P ADD T + +P Y+ RH
Sbjct: 456 GNTPIPVKQVGGMPLQSPLPVSMKPSADDHSRATPTRSVEAPTLPSYAPRH 506
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 60 TSFNDESGEPSERLARFKRW 119
TS +D S + +ER +RFK W
Sbjct: 300 TSEDDSSDDATERASRFKSW 319
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 163 TWFISGPGRQPCLLLKRDFSQCL 231
+WF S PGR+ + +K DF + L
Sbjct: 43 SWFCSRPGREYFVEVKEDFIEDL 65
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 118 HLLKRASRSEGSPLSSLKLV*DTSAVTFMS-PTPFNSN 8
HL+ R+E S L +L+L D SAV + P PF S+
Sbjct: 476 HLITLVHRNEKSSLPNLELYIDGSAVERAACPYPFLSS 513
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 472 FCLINLYQWNTAA 434
FCL NL+ WNT++
Sbjct: 693 FCLGNLHDWNTSS 705
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,632
Number of Sequences: 5004
Number of extensions: 41373
Number of successful extensions: 109
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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