Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B16
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 50 1e-06
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 43 1e-04
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 40 0.001
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 39 0.002
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 39 0.002
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 33 0.089
12_02_1239 - 27275110-27275445 30 0.83
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 2.5
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 28 3.3
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 28 3.3
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 49.6 bits (113), Expect = 1e-06
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Frame = +3
Query: 117 WLWAIVDKMTHLERQDLVYFWTGSPALPASEEGFQPMPSVT------IRPADDA--HLPT 272
W W +V+ + + + F TG+ +P EGF+ + ++ I A A LP+
Sbjct: 3544 WFWEVVNGFSKEDMARFLQFVTGTSKVPL--EGFKALQGISGPQRFQIHKAYGAPERLPS 3601
Query: 273 ANTCISRLYIPLYSSRHVLKHKLLLAIKTKNFGF 374
A+TC ++L +P YSS+ L+ +LLLAI + GF
Sbjct: 3602 AHTCFNQLDLPEYSSKEQLEERLLLAIHEASEGF 3635
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +3
Query: 153 ERQDLVYFWTGSPALPASE-EGFQPMPSVTIRPAD---DAHLPTANTCISRLYIPLYSSR 320
+++ ++F TG+P LP P +V + D D LP+ NTC +P YSS+
Sbjct: 1241 DQRAFLHFTTGAPQLPLGGLASLDPKLTVVRKQCDGKVDNELPSVNTCRHFFKLPPYSSK 1300
Query: 321 HVLKHKLLLAIK 356
+++ KL AIK
Sbjct: 1301 EIMRQKLKYAIK 1312
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 39.5 bits (88), Expect = 0.001
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = +3
Query: 120 LWAIVDKMTHLERQDLVYFWTGSPALPASEEGFQPM-PSVTI-------RPADDAHLPTA 275
L ++ + +R+ + F TGSP LP G + P +T+ ADD LP+
Sbjct: 1392 LLEVIQEFEGHQRRAFLQFITGSPRLPPG--GLAALNPKLTVVRKQHNSNEADD-DLPSV 1448
Query: 276 NTCISRLYIPLYSSRHVLKHKLLLAI 353
TC + L +P YSS+ ++ KLL AI
Sbjct: 1449 MTCANYLKLPPYSSKDKMREKLLYAI 1474
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 132 VDKMTHLERQDLVYFWTGSPALPASEEGFQPMPSVTIRPADDA-HLPTANTCISRLYIPL 308
V+ ++ +++ L++FWT LP+ G + ++ A LP+++TC RL +P
Sbjct: 748 VESLSIEQQRQLLFFWTSVKYLPSDGFGGLASKLYIYKVSESADRLPSSHTCFYRLCLPA 807
Query: 309 YSSRHVLKHKL 341
Y S V +++L
Sbjct: 808 YPSLKVTRNQL 818
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 39.1 bits (87), Expect = 0.002
Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Frame = +3
Query: 6 RLLLNGVGDINVTALVSYTSFNDESGEPSERLARFKRWLWAIVDKMTHLERQDLVYFWTG 185
+LL G+ D +V L + T + E S + F W ++ ER L+ F T
Sbjct: 1043 QLLSGGLQDFDVDDLRNNTKYTGGYTESSRSVKLF----WEVIKGFKPTERCMLLKFVTS 1098
Query: 186 SPALPASEEGFQPM-PSVTIR--PADDA-----------HLPTANTCISRLYIPLYSSRH 323
P GF+ + PS TI P D LP+A+TC + L +P Y
Sbjct: 1099 CSRAPLL--GFKYLQPSFTIHKVPCDVTLWATIGGQDVDRLPSASTCYNTLKLPTYKRSS 1156
Query: 324 VLKHKLLLAIKTKNFGF 374
L+ KLL AI + N GF
Sbjct: 1157 TLRSKLLYAI-SSNTGF 1172
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 33.5 bits (73), Expect = 0.089
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 252 DDAHLPTANTCISRLYIPLYSSRHVLKHKLLLAIKTK 362
D+ LPT+ TC++ L +P Y ++ L+ KLL AI +
Sbjct: 988 DEDRLPTSATCMNLLKLPPYRNKTQLESKLLYAINAE 1024
>12_02_1239 - 27275110-27275445
Length = 111
Score = 30.3 bits (65), Expect = 0.83
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 153 ERQDLVYFWTGSPALPASEEGFQPMPSVTIRPA-DDAHL 266
E +DLV TG+PA P + P V +RPA D+A L
Sbjct: 50 EFRDLVQRLTGAPAPPPPRQPVAPAQPVPVRPAVDEAQL 88
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 168 VYFWTGSPALPASEEGFQPMPSVTIRPADDAHLPTANT 281
+ FW P LP+S G P PS + P LP +T
Sbjct: 582 IQFWQPPPQLPSSAAGGNPNPSSSAFPYLKKPLPMLDT 619
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 244 DQQTMRTCPPLTRVFRGSIYRCTLRVMCSNINYC*PSKLRTL 369
+ TM PPL +FRG + RC + + +Y PS+ R L
Sbjct: 914 EDSTMDKIPPLA-LFRGDLKRCCESMQVALASYLVPSEARGL 954
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 144 THLERQDLVYFWTGSPALPASEEGFQPMPSVTIRPADDAH 263
T +ER D ++W G + A G +P P + RP H
Sbjct: 51 TSVERTDPPWWWRGEHSRGALGGGARPSPLTSSRPTPPGH 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,080
Number of Sequences: 37544
Number of extensions: 281881
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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