Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B16
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.24 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 195 LPASEEGFQPMPSV--TIRPADDAHLPTANTCISRLYIPLYSSRHVL 329
           L  S +GF+ + S    IR  D  H+P A+   S   +P Y S  V+
Sbjct: 402 LKGSPDGFESVTSQYKNIREDDARHIPHASVTDSENTVPRYLSPDVI 448


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 186 SPALPAS-EEGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRHVLKHKLLL 347
           S  +P S E      P    R +   HL   ++      +P+Y S H L H  +L
Sbjct: 28  SSGIPHSAESSASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,138
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)