Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B15
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   1.5  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   2.0  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    26   2.7  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   3.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   4.7  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   6.2  
SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.2  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   8.2  

>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 397 SISRELLARFILEDSAHYLFYSLLFMNVAP 486
           S S+E+LA FI  D   YLFY+L F+   P
Sbjct: 437 SPSKEILAFFI--DQTWYLFYALFFICNVP 464


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -2

Query: 271 GLLALGLPRALHQFC*Q*HELLMLVCPLVGLCLQIEGSDQPLSGKKILTGSNL 113
           G LAL +  A + F  + H    L+C +V  CLQ E + +P S +++L+  +L
Sbjct: 290 GSLALAVCNAQYSFPRK-HPYSTLLCEIVEACLQREPNKRP-SARELLSKIDL 340


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 157 QNPQS--GDTGPPKGIPALKAHVIANKID 237
           +NP+   G  GP KG  A+K H I  +ID
Sbjct: 326 KNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 13  SFIRGDIDSGLIVQLPFLTV 72
           SF+  D+D  L++ +PFL V
Sbjct: 159 SFLESDVDEQLMIYIPFLEV 178


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 252 NPSANSPLHYRISYTYF*QSSVS 320
           +PSAN P H    Y Y+ +SS S
Sbjct: 264 SPSANYPYHEAYEYYYYIRSSFS 286


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 169 SGDTGPPKGIPALKAHVIA 225
           SG TG PKG+  L  ++IA
Sbjct: 254 SGSTGKPKGVVLLHRNIIA 272


>SPCC16A11.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 133 FFSQTMADQNPQSGDTGPPK 192
           FF+ ++  +NPQ  D  PPK
Sbjct: 39  FFASSVHSRNPQEEDVIPPK 58


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 424 FILEDSAHYLFY 459
           FIL D+ HYLFY
Sbjct: 317 FILADNRHYLFY 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,880
Number of Sequences: 5004
Number of extensions: 40270
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)