Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B15
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0238 - 21614535-21615347,21616759-21617352                       29   2.0  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    29   2.7  
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531...    29   2.7  
08_02_0684 + 20031661-20031957,20032094-20032512,20033600-200336...    28   3.5  
10_01_0313 + 3447065-3448204                                           28   4.7  
01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453...    27   8.2  

>11_06_0238 - 21614535-21615347,21616759-21617352
          Length = 468

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 298 IFNNPVS-AFYKALLANAATSALRLHQRIPAREISISRELLA 420
           ++++ +S A Y  L A AA  ALR  +  PA +++ +RELLA
Sbjct: 4   LYHHAISNAPYLMLAAAAAAVALRASRLAPADDLATARELLA 45


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 271 GLLALGLPRALHQFC*Q*HELLMLVCPLVGLCLQIEG 161
           G+ A G P   H+ C      LM+VCP  G C  + G
Sbjct: 468 GMAARGDPMCEHETCLATGSNLMMVCPECGWCFCVGG 504


>05_04_0375 +
           20750170-20751011,20751707-20751865,20752894-20753146,
           20753287-20753316
          Length = 427

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 64  LTVSC*LYIHIFRQIAKDLSQLGFFSQTMADQNPQSGDTGPPKGIP 201
           L +SC LY+++FR + +  +  GF  + +   +   G   P  G P
Sbjct: 66  LVLSCALYLYVFRYLGRGSAVAGFVGRDLEPCDVFDGAWVPDAGYP 111


>08_02_0684 +
           20031661-20031957,20032094-20032512,20033600-20033606,
           20033905-20033982,20034086-20034121
          Length = 278

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 195 ALWWACVSRLRVLISHCLGKKS 130
           ALW AC  R+   ++HCL  K+
Sbjct: 29  ALWLACALRIASAVNHCLAVKA 50


>10_01_0313 + 3447065-3448204
          Length = 379

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 280 IGYLIPIFNNPVSAFYKALLANAATSALRLHQRIPAREISISRELL 417
           +G+  P   +PV +F     +  A   L  H+ +P REI +  E++
Sbjct: 80  LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGLRWEIV 125


>01_07_0156 -
           41544396-41544755,41544854-41544983,41545085-41545374,
           41545482-41545663,41545784-41546003,41546121-41546139,
           41546394-41546654,41546775-41546863
          Length = 516

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 236 SILLAMT*AFNAGMPFGGPVS 174
           S+L  +T  +N G+ +GGPVS
Sbjct: 43  SVLTGVTATYNTGLRYGGPVS 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,489,030
Number of Sequences: 37544
Number of extensions: 245816
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)