Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B15
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...    84   6e-17
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    29   2.4  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    29   2.4  
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
 Frame = +1

Query: 184 PPKGIPALKAHVIANKIDVALWAIRVLTVLCTIGYLIPIFNN-PV-SAFYKALLANAATS 357
           PP    ++  +V AN ++  L+A RVLTV   + Y+IP     P  SA+YK   A+AAT 
Sbjct: 31  PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90

Query: 358 ALRLHQRIPAREISISRELLARFILEDSAHYLFYSLLFMNVAP 486
           ALRLH RI   + +++ + + R I+EDS HYL YS++F+  AP
Sbjct: 91  ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAP 132


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 162 PSIWRHRPTKGHTSIKSS 215
           PS+WRH  T+ +TS+K+S
Sbjct: 179 PSLWRHLRTRTNTSVKAS 196


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 162 PSIWRHRPTKGHTSIKSS 215
           PS+WRH  T+ +TS+K+S
Sbjct: 179 PSLWRHLRTRTNTSVKAS 196


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/72 (20%), Positives = 32/72 (44%)
 Frame = +1

Query: 184 PPKGIPALKAHVIANKIDVALWAIRVLTVLCTIGYLIPIFNNPVSAFYKALLANAATSAL 363
           P  G   L   +  N +   L+++   +  C I +   ++ + V+ F + L+  A  +  
Sbjct: 166 PVIGSSTLDQQIHGNHLPGELYSVMFESFFCVIPFAEEVYTDGVALFVEVLVPIALCTVC 225

Query: 364 RLHQRIPAREIS 399
            L  ++  +EIS
Sbjct: 226 ALKLKMITKEIS 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,839,109
Number of Sequences: 27780
Number of extensions: 220443
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)