Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B14
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   1.7  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   5.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    24   6.8  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    24   9.0  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    24   9.0  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    24   9.0  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    24   9.0  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 11  FFLFCFLTIF-IYNNGVRRHFEIVFLSFAKDYVSHYASTL 127
           FF+FC + +F IY +     F +   SF   +V H  S +
Sbjct: 56  FFIFCLIPLFVIYVSSKVGVFTLCIASFLPSFVLHVISPI 95


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 253 VRPRHRYSTYQRMHRRRMIYLWNSVCYEPDV*SLSVVDLKL 375
           V P+  Y  + R      +  W ++CY P    +  V LK+
Sbjct: 256 VNPKIMYHLFGRRCLLPSVTFWQNICYPPIFVKIVDVSLKI 296


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 316 RDISYADGACADKLNTCALAVQARLGHYPYYTDNCCNS 203
           + +  AD AC D+L +  L +   L  Y YY D  C S
Sbjct: 673 KSLKIAD-ACMDQLTSLKLFINI-LERYFYYYDQHCES 708


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 349 TRHQVRNTQNSRDISYADGACADKLN 272
           T H++R T  SR++   +  C+D +N
Sbjct: 16  TVHRIRITLTSRNVRNLEKVCSDLVN 41


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/70 (20%), Positives = 35/70 (50%)
 Frame = +2

Query: 116 ASTLYHNKC*PL*CESLEVTSSKYLSSMARVTAVVGIIRVVTQTSLYGQGTGIQLISACT 295
           A+ +  + C P+  +  ++TS     ++  +  V+G I V + +++     G   IS  +
Sbjct: 128 ATAIISSVCKPILGKFSDITSRPMTYTLVLLFYVIGFIVVASSSTISAYVIGSVFISIGS 187

Query: 296 VGV*YISGIL 325
            G+ Y++ ++
Sbjct: 188 SGLDYLNTLV 197


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 99  ITFLTMRP--LCITISVNRFSANLLRLPLVSTYRPWQELQQLS 221
           + FLT+R   LC +I ++  + N L   +    R W  +  +S
Sbjct: 32  LAFLTLRYTLLCYSIPIHIHTVNYLAFTIARMKRVWPRIPTIS 74


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 273 IPVPWPYKLVWVTTRIIPTT 214
           +P PW Y  +++ TR  P+T
Sbjct: 211 LPEPWHYMCMFLDTRYDPST 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,959
Number of Sequences: 5004
Number of extensions: 28889
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)