Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B14
(376 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81530-3|CAB04307.1| 64|Caenorhabditis elegans Hypothetical pr... 28 1.9
AF125954-4|AAD14710.1| 337|Caenorhabditis elegans Seven tm rece... 28 1.9
AC006769-5|AAF60577.2| 339|Caenorhabditis elegans Hypothetical ... 28 1.9
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z49132-2|CAA88982.1| 64|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z48055-4|CAA88132.2| 301|Caenorhabditis elegans Hypothetical pr... 28 2.5
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 2.5
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 2.5
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 27 4.4
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 26 7.6
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 26 7.6
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 26 7.6
U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical p... 26 7.6
>Z81530-3|CAB04307.1| 64|Caenorhabditis elegans Hypothetical
protein F36D1.4 protein.
Length = 64
Score = 28.3 bits (60), Expect = 1.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 244 LGHYPYYTDNCCNSCHG 194
+GH YY D+CC C G
Sbjct: 44 VGHGGYYNDDCCGCCCG 60
>AF125954-4|AAD14710.1| 337|Caenorhabditis elegans Seven tm
receptor protein 119 protein.
Length = 337
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 161 SLEVTSSKYLSSMARVTAVV-GIIRVVTQTSLYGQGTGI 274
SL++ S KYL + V +++ GI+ V+TQ ++ +GT +
Sbjct: 32 SLKIGSYKYLMATFTVFSMIYGIVEVLTQPVMHIEGTAL 70
>AC006769-5|AAF60577.2| 339|Caenorhabditis elegans Hypothetical
protein Y45G12C.10 protein.
Length = 339
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 161 SLEVTSSKYLSSMARVTAVV-GIIRVVTQTSLYGQGTGI 274
SL++ S KYL + V +++ GI+ V+TQ ++ +GT +
Sbjct: 34 SLKIGSYKYLMATFTVFSMIYGIVEVLTQPVMHIEGTAL 72
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 111 TMRPLCITISVNRFSANLLRLPLVSTYRPW 200
TM PLC+ + + ++ LLR + Y W
Sbjct: 1218 TMIPLCVLVFITLYAFGLLRQSITYPYEDW 1247
>Z49132-2|CAA88982.1| 64|Caenorhabditis elegans Hypothetical
protein ZK666.2 protein.
Length = 64
Score = 27.9 bits (59), Expect = 2.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 241 GHYPYYTDNCCNSCHG 194
GH YY D+CC C G
Sbjct: 45 GHGGYYNDDCCGCCCG 60
>Z48055-4|CAA88132.2| 301|Caenorhabditis elegans Hypothetical
protein T07A5.2 protein.
Length = 301
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 160 FALKRLTLIVIQSGRIVRNVIFSKT*KDDFKMSAHAVII 44
FAL ++ ++IQ ++ +N I+ K KD F A ++
Sbjct: 81 FALWQMLYLLIQPSKVYKNFIYRKRTKDQFARDDPAFLV 119
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 111 TMRPLCITISVNRFSANLLRLPLVSTYRPW 200
TM PLC+ + + ++ LLR + Y W
Sbjct: 1218 TMIPLCVLVFITLYAFGLLRQSITYPYEDW 1247
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 111 TMRPLCITISVNRFSANLLRLPLVSTYRPW 200
TM PLC+ + + ++ LLR + Y W
Sbjct: 1205 TMIPLCVLVFITLYAFGLLRQSITYPYEDW 1234
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 289 CADKLNTCALAVQARLGHYPYYTDNCCNSC 200
C D L C + R G+ + T+NC +C
Sbjct: 304 CTDVLTGCLTHLCDRKGYRQFMTNNCAKTC 333
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 234 TRIIPTTAVTLAMDDKYLL 178
T IIP T++TL + KYLL
Sbjct: 307 TEIIPATSITLPLIGKYLL 325
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 234 TRIIPTTAVTLAMDDKYLL 178
T IIP T++TL + KYLL
Sbjct: 307 TEIIPATSITLPLIGKYLL 325
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 234 TRIIPTTAVTLAMDDKYLL 178
T IIP T++TL + KYLL
Sbjct: 307 TEIIPATSITLPLIGKYLL 325
>U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical
protein C26B2.4 protein.
Length = 371
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 232 PYYTDNCCNSCHGR*VLTRGNLKRFALKRLTLIVIQSGRIVRNV 101
P+Y CC SC G + K+F R + VIQ G RN+
Sbjct: 24 PHYGTICCPSCKGFFRRVYMSDKKFECYRGNMCVIQKG--TRNI 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,406,489
Number of Sequences: 27780
Number of extensions: 163537
Number of successful extensions: 433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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