Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B14
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.3  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 234 TRIIPTTAVTLAMDDKYLL 178
           + IIP+T++ L +  KYLL
Sbjct: 285 SEIIPSTSLALPLLGKYLL 303


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 240 VTTRIIPTTAVTLAMDDKYLL 178
           + ++I+P T++ L +  KYLL
Sbjct: 281 LVSKILPPTSLVLPLIAKYLL 301


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 228 IIPTTAVTLAMDDKYLL 178
           IIP T++T+ +  KYLL
Sbjct: 288 IIPPTSLTVPLLGKYLL 304


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 336 FVTHRIPEIYHTPTV 292
           FV HR PE+   PT+
Sbjct: 190 FVIHRSPELVPMPTL 204


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 231 RIIPTTAVTLAMDDKY 184
           R  PT A+  A  DKY
Sbjct: 82  RYFPTQALNFAFKDKY 97


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 231 RIIPTTAVTLAMDDKY 184
           R  PT A+  A  DKY
Sbjct: 82  RYFPTQALNFAFKDKY 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,160
Number of Sequences: 438
Number of extensions: 1897
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)