Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B13
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    33   0.23 
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    28   4.9  
06_02_0235 + 13324961-13324965,13326029-13326416,13326505-133266...    28   6.5  

>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 166 CGLVECTFSYLIGDLIWRVLNFHCNKIFVCSLGGLFR 276
           C L +C FSY+  D + R +  H  K+F CS+ G  R
Sbjct: 90  CPLEDCPFSYIRKDHLNRHMLKHQGKLFTCSMDGCGR 126


>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 589 LILYHRYILCVNQIYYIHFCII-NLNTSVVTFK 494
           + +YH  I C    Y+I++ I+ NL+ SV  FK
Sbjct: 287 ITIYHLLIACFTVNYFIYYLILCNLDHSVYLFK 319


>06_02_0235 +
           13324961-13324965,13326029-13326416,13326505-13326618,
           13326869-13327428,13327513-13327624,13328475-13328519
          Length = 407

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 175 VECTFSYLIGDLIWRVLNFHCNKIFVCSLGGLFRDVK*RVKLI 303
           V C F    GD+ WR    H N I    LGGLF +V+  V L+
Sbjct: 107 VICLFERYAGDVAWR----HTNGI---GLGGLFSEVRPDVTLV 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,929
Number of Sequences: 37544
Number of extensions: 237671
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)