Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B12
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   2.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   3.8  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   5.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.0  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 89  CKTASKANFACKSYDVSASMKKPVTVSTSKYPT 187
           C + S  NF+   Y   + M++P+T+S S  P+
Sbjct: 396 CISPSGTNFSPSCYSPESLMQQPLTLSPSSIPS 428


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 122 KSYDVSASMKKPVTVST--SKYPTT 190
           +SY  S++   P+T+ST  S +PTT
Sbjct: 515 QSYSTSSNFTTPITISTSLSSFPTT 539


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 161 TVSTSKYPTTKKEEQKKDYGAWGSIYKDKKTF 256
           TV  S+Y +  +E +    G +GS+YK +  F
Sbjct: 214 TVQRSRYASDFEELELLGKGGYGSVYKARNKF 245


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 411 RVLNINNHI*QLKESIMKYYRNTKYIESCDETV 313
           RV N+N++I +L+  I +  RN  + ES  ET+
Sbjct: 377 RVDNLNDYITKLQNEIDECRRNLLWAESSCETI 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,171
Number of Sequences: 5004
Number of extensions: 33722
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)