Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B11
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.60 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    27   1.4  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   5.6  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   7.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   7.3  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.7  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   9.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 306  TSGEIVVKALSLYRVKKTPSATLLRLSNIFIPYIFF-KH 419
            T+ +I+   L++Y  +  P    L L ++F P+IFF KH
Sbjct: 1365 TNEQIISSKLTVYASRYAPDV-FLNLGSLFFPFIFFGKH 1402


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +3

Query: 213 HYNF*HIPSEHDEN*YLQA*CVYHPGSHRYLTSGEIVVKALSLYRVKKTPSATLLRLSNI 392
           H +   +  E DEN  +      +P S  Y  S   V   +  YR     S T++R +N+
Sbjct: 146 HVSTDEVYGEQDENASVDEKSKLNPTSP-YAASKAAVDLIIQSYRYSYKISVTVIRANNV 204

Query: 393 FIPYIFFKHLIP 428
           + P  + + LIP
Sbjct: 205 YGPRQYEEKLIP 216


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 299 LLNIR*DSGQSTEPISCKKNTLCYVATFVQHFYSIYIFQTSNSYSILI 442
           LL++   S + T  ISC+K  L + AT       IYI   S    I +
Sbjct: 125 LLSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIYIASASAFQQIYV 172


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 390 IFIPYIFFKHLIP 428
           IFIP +F+K+L+P
Sbjct: 87  IFIPVLFYKYLVP 99


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 183 LNKLDVGMFHSILVNPTKEIAKMLCELIE 97
           L  +D     +++V PT+E+A  +C+  E
Sbjct: 185 LRNVDAKYVQALVVAPTRELAHQICQHFE 213


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 177 KLDVGMFHSILVNPTKEIAKMLCE 106
           +L+    HS++++PT+E+A  + E
Sbjct: 107 RLNSSKIHSVILSPTRELALQIFE 130


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 312 LMLSNDVIQGDKHTKPGGTSSHHVLTECVKNYN 214
           L L+ ++   +KH +P    S+H L E +  Y+
Sbjct: 753 LTLTQEIALVNKHVQPSKHPSNHDLEELIHKYD 785


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 415 LKNIYGIKMLDKRSNVAEGVFFT 347
           L N+Y  K+L KRS ++  + FT
Sbjct: 319 LSNLYVWKILQKRSEISVSLLFT 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,268
Number of Sequences: 5004
Number of extensions: 42707
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)