Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B11
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284...    29   3.2  
01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770...    27   9.9  

>01_01_0362 -
           2843659-2844468,2844669-2844699,2844824-2844903,
           2846680-2847831
          Length = 690

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +3

Query: 288 GSHRYLTSGEIVVKALSLYRVKKTPSATLLRLSNIFIPYIFFKHLIPTVY*FYFHASSAK 467
           G HRYLTS  I+    S    K+ PS++    S     Y+  +H       FY ++++  
Sbjct: 166 GLHRYLTSYAIITSTDSDLDGKQPPSSSSSGRSTFSQLYLVVQHKKDCNEYFYSYSAATC 225

Query: 468 SSTR*HKCV*GPR 506
           S +    CV G R
Sbjct: 226 SWSAPTMCVDGRR 238


>01_07_0099 -
           41076056-41076059,41076135-41076175,41076937-41077041,
           41077476-41077552,41078773-41078944,41079099-41079194,
           41080268-41080465
          Length = 230

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 454 LLVPNPAHANINACRDQEFSIH 519
           LL+ +    N+ +CRDQ+FS+H
Sbjct: 147 LLLVSKNSINLVSCRDQDFSVH 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,295
Number of Sequences: 37544
Number of extensions: 230465
Number of successful extensions: 409
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)