Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B10
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 241 2e-64
12_02_1049 + 25681284-25681349,25684409-25684627,25684720-256849... 230 3e-61
03_01_0550 + 4111847-4112055,4112366-4112630 29 1.7
11_06_0610 - 25449085-25453284 29 2.3
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 28 3.0
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 28 3.0
01_07_0044 - 40701286-40701408,40701642-40701758,40702406-407024... 28 3.0
01_06_1718 - 39408179-39408427,39409102-39409217,39409460-394096... 28 3.0
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 28 4.0
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770... 28 4.0
06_01_0139 - 1061630-1062226,1062318-1062449,1062945-1063934,106... 27 5.3
05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312... 27 5.3
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 27 5.3
01_06_1191 - 35297005-35297473,35297812-35298965 27 5.3
01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038 27 5.3
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 27 5.3
12_02_0045 + 12824766-12825417,12826608-12826753,12826825-128269... 27 7.0
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 27 7.0
11_01_0719 - 5924088-5924362,5924458-5924605 27 9.2
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204 27 9.2
07_03_1028 - 23378140-23378802 27 9.2
04_01_0067 - 673381-673387,675388-678131 27 9.2
02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302... 27 9.2
01_06_0856 - 32503824-32505014 27 9.2
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 241 bits (590), Expect = 2e-64
Identities = 108/145 (74%), Positives = 128/145 (88%)
Frame = +3
Query: 12 QHDQIGKFVEGTVAEGAPIIPISAQLKYNIEVLCEYITKKIPVPLRDFTSPPRMIVIRSF 191
QH+ I KF++GT+AEGAP++PISAQLKYNI+V+CEYI KKIP+P R+FTSPP MIVIRSF
Sbjct: 223 QHEAIQKFIQGTIAEGAPVVPISAQLKYNIDVICEYIVKKIPIPERNFTSPPNMIVIRSF 282
Query: 192 DVNKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDSDGKLTCRPIFSRIVSLF 371
DVNKPG EVD++RGGVAGGSIL+GVL V IEVRPG+V KD G + C PI+SRIVSL+
Sbjct: 283 DVNKPGSEVDEIRGGVAGGSILRGVLRVNQNIEVRPGIVMKDESGNIKCTPIYSRIVSLY 342
Query: 372 AEQNELQYAVPGGLIGVGTKIEPTL 446
AEQNELQ+AVPGGLIGVGT ++PTL
Sbjct: 343 AEQNELQFAVPGGLIGVGTTMDPTL 367
>12_02_1049 +
25681284-25681349,25684409-25684627,25684720-25684980,
25685060-25685362
Length = 282
Score = 230 bits (563), Expect = 3e-61
Identities = 104/136 (76%), Positives = 121/136 (88%)
Frame = +3
Query: 39 EGTVAEGAPIIPISAQLKYNIEVLCEYITKKIPVPLRDFTSPPRMIVIRSFDVNKPGCEV 218
EGT+AEGAP++PISAQLKYNI+V+CEYI KKIP+P R+FTSPP MIVIRSFDVNKPG EV
Sbjct: 22 EGTIAEGAPVVPISAQLKYNIDVICEYIVKKIPIPERNFTSPPNMIVIRSFDVNKPGSEV 81
Query: 219 DDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDSDGKLTCRPIFSRIVSLFAEQNELQYA 398
D++RGGVAGGSIL+GVL V IEVRPG+V KD G + C PI+SRIVSL+AEQNELQ+A
Sbjct: 82 DEIRGGVAGGSILRGVLRVNQNIEVRPGIVMKDESGNIKCTPIYSRIVSLYAEQNELQFA 141
Query: 399 VPGGLIGVGTKIEPTL 446
VPGGLIGVGT ++PTL
Sbjct: 142 VPGGLIGVGTTMDPTL 157
>03_01_0550 + 4111847-4112055,4112366-4112630
Length = 157
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 289 SISMPTVSTP*RMEPPATPPLRSSTSQPGLFTSNERITIIRGGDVKSLSG 140
++S + P + PA P R +TS + T+N R + R VKS G
Sbjct: 104 ALSSTAAALPAELPDPAPPTSRGATSSSSVLTANRRKWMRRIRPVKSQEG 153
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 418 PIRPPGTAYWSSFCSANSDTIRENIGRQVNLPSESLLTKPGRTSISMPTVSTP*RMEPPA 239
PI PP T S S ++ ++ + + P+E L P S+ PTV P +
Sbjct: 1084 PISPPETPEKSYPPSTPEESSPPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPPVPVS 1143
Query: 238 TPPLRSSTSQP 206
+PP + P
Sbjct: 1144 SPPPPEKSPPP 1154
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 390 GAHSVQRTATRYGRILDDKSIC--RPSPYSLSPVVLRSPCRR 271
G+ + G I+ + C RPSP+SLSP + C R
Sbjct: 20 GSQGSESATKNQGGIIPSSTKCATRPSPFSLSPSISTPGCAR 61
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 EVLCEYITKKIPVPL-RDFTSPPRMIVIRSFDVN 200
E++ + IT+ + V L R T+PPR I +FDV+
Sbjct: 413 EIIMQEITRMVSVNLFRTLTTPPRENKIEAFDVD 446
>01_07_0044 -
40701286-40701408,40701642-40701758,40702406-40702498,
40702598-40702717,40702932-40703048,40703202-40703297,
40703395-40703544,40703916-40704070,40704156-40704196,
40704275-40704357,40704827-40705264
Length = 510
Score = 28.3 bits (60), Expect = 3.0
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 243 GGSILQGVLTVGMEIEVRPGLVSKDSDGKLTCRP-IFSRIVSL----FAEQNELQY 395
GGS L T+G + +R V KD DG LTC P I+ ++ F E EL Y
Sbjct: 302 GGSDLTAT-TIGKALGLREIQVWKDVDGVLTCDPNIYPNATTVPYLTFEEAAELAY 356
>01_06_1718 -
39408179-39408427,39409102-39409217,39409460-39409603,
39409700-39410930,39411213-39411494
Length = 673
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 1 ARGNSTTKSESSWRALSRKELPSYLYPLNSNII 99
A G S++ + +W A ++ PS+ YP +SN++
Sbjct: 294 AIGASSSTKDVTWDANKSEDYPSFSYPESSNVM 326
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 243 GGSILQGVLTVGMEIEVRPGLVSKDSDGKLTCRP 344
GGS L T+G + +R V KD DG LTC P
Sbjct: 185 GGSDLTAT-TIGKALGLREIQVWKDVDGVLTCDP 217
>03_06_0691 +
35576319-35576702,35576803-35576885,35576972-35577012,
35577974-35578018,35578217-35578371,35579116-35579265,
35579386-35579481,35579738-35579854,35579969-35580088,
35580170-35580262,35580351-35580467,35580815-35580931,
35581089-35581151,35581238-35581399
Length = 580
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 243 GGSILQGVLTVGMEIEVRPGLVSKDSDGKLTCRP 344
GGS L T+G + +R V KD DG LTC P
Sbjct: 299 GGSDLTAT-TIGKALGLREIQVWKDVDGVLTCDP 331
>06_01_0139 -
1061630-1062226,1062318-1062449,1062945-1063934,
1064041-1064211
Length = 629
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 372 RTATRYGRILDDKSIC-RPSPYSLSPVVLRSPCRR 271
RTAT+YGR+ S C PSP SL + L P +R
Sbjct: 431 RTATQYGRVF---SYCIPPSPSSLGFITLGVPPQR 462
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 378 VQRTATRYGRILDDKSIC-RPSPYSLSPVVLRSPCRR 271
VQ+TATRYGR+ S C P+ SL +VL P R
Sbjct: 205 VQQTATRYGRVF---SYCLPPTASSLGFLVLGVPPER 238
>05_01_0395 +
3118480-3119097,3119699-3119989,3120063-3120114,
3120395-3120546
Length = 370
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 162 PPRMIVIRSFDVNKPGCEVDDLRGGVAGGS 251
PPR+++ + D+ P C V L G G+
Sbjct: 140 PPRLVMRATKDLGNPSCTVSMLAAGAGAGN 169
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 346 IGRQVNLPSESLLTKPGRTSISMPTVSTP*RMEPPATPPLRSSTSQPG 203
+G Q+ P + KP R + VS+P ++ ATPP QPG
Sbjct: 28 LGLQLG-PFVCMWLKPTRRELCPRLVSSPAKLTDDATPPQPPPQPQPG 74
>01_06_1191 - 35297005-35297473,35297812-35298965
Length = 540
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 199 FTSNERITIIRGGDVKSLSG--TGIFFVIYSQRTSILYLS*ADIG 71
+++ +I R G + SL G FF++ +QR LYL+ A IG
Sbjct: 382 YSAKSGYSISRTGSMASLMAPMAGAFFLLLNQRDFFLYLATAVIG 426
>01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038
Length = 370
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 105 VLCEYITKKIPVPLRDFTSPPRMIVIRSFDVNKPGCEVDDLRGGVAGG 248
VL E++ + VP D PP+M RSF P D L G + G
Sbjct: 40 VLAEFLEASLRVP--DLALPPKMSSRRSFRYPAPPPTPDVLAGALLSG 85
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 27.5 bits (58), Expect = 5.3
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -2
Query: 439 GSILVPTPIRPPGTAYWSSFCSANSDTIRENIGRQVNLPSESLLTKPGRTSISMPTVSTP 260
G + P P P A+ S SA+S + PS S T P + S TV+TP
Sbjct: 202 GPPIPPPPPPVPPAAFKSKSYSASSRVSLPSTSAPS--PSSSTSTSPTYSCSSSDTVTTP 259
Query: 259 *RMEPPAT--PPLRSSTSQPGL 200
+P + PP+ P L
Sbjct: 260 RNRKPELSKLPPIPPPPPMPAL 281
>12_02_0045 +
12824766-12825417,12826608-12826753,12826825-12826935,
12827854-12828441
Length = 498
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 351 RILDDKSICRPSPYSLSPVVLRSPCRR*APPEGW 250
R LD K + RP P L + SP R A P W
Sbjct: 19 RRLDPKPLLRPKPLLLLSTAMGSPAR--AQPSSW 50
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 286 ISMPTVSTP*RMEPPATPPLRSSTSQPGLFT 194
+S P TP +PP PP S+PG+ T
Sbjct: 205 VSSPAPGTPVTPQPPPPPPPPPPDSKPGVDT 235
>11_01_0719 - 5924088-5924362,5924458-5924605
Length = 140
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 367 SDTIRENIGRQVNLPSESLLTKPGRTSISMPTVSTP*RMEPPATPP 230
S T G + P L++P R +PTV +P EP TPP
Sbjct: 65 SATAAAAAGDDASTPPPPQLSRPNR---DLPTVPSPLDHEPVPTPP 107
>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
Length = 449
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 26 RKVRGGHCRGRSSHHTYIRSTQI 94
RK RG C G HH Y +T+I
Sbjct: 263 RKARGRLCVGNRIHHDYQNNTEI 285
>07_03_1028 - 23378140-23378802
Length = 220
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 295 RTSISMPTVSTP*RMEPPATPP 230
R+ PT+S P R+ PPATPP
Sbjct: 143 RSQRRAPTISGP-RVPPPATPP 163
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 26.6 bits (56), Expect = 9.2
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Frame = -1
Query: 302 ARSYFDLHADG--KHPLKDGAPGDSAPQV-VDLAARLVHVKRTYHNHTRRRCEVSKRDG- 135
+RS+FD+ + H + D A V D R+ H + T R V++ DG
Sbjct: 495 SRSFFDVRREACETHYVMHDLVHDLAQSVSADQCLRVEHGMISEKPSTARYVSVTQ-DGL 553
Query: 134 -NLFRYIFTENLYIIFELSGYRYDGSSFRDSALHELSDLVVL 12
L + ENL + L + + S F+D ++ +L VL
Sbjct: 554 QGLGSFCKPENLRTLIVLRSFIFSSSCFQDEFFRKIRNLRVL 595
>02_05_1234 -
35127322-35128378,35128423-35128467,35130016-35130275,
35130610-35131365,35132115-35132122,35133559-35134327
Length = 964
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 209 ARLVHVKRTYHNHTRRRCEVSKRDGN 132
AR V+ R HNH R+ C +S G+
Sbjct: 236 ARKVNPPRQSHNHERKECSLSGLQGS 261
>01_06_0856 - 32503824-32505014
Length = 396
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -2
Query: 445 SVGSILVPTPIRPPGTAYWSSFCSANSDTIRENIGRQVNLPSESLLTKPG 296
SV S P P PP TA SS S +S + +G N+P ESL T G
Sbjct: 198 SVTSKPPPPPAAPPPTAADSSAASPDSSREPDELG---NIP-ESLYTNGG 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,811
Number of Sequences: 37544
Number of extensions: 318750
Number of successful extensions: 1177
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -