Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B10
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 240 3e-64
U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical pr... 32 0.22
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 30 0.68
AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical ... 29 1.6
U41533-9|AAS60256.1| 155|Caenorhabditis elegans Hypothetical pr... 29 2.1
U41533-8|AAA83171.2| 588|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 28 2.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 2.7
U40934-7|AAA81685.1| 168|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical pr... 27 4.8
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical ... 27 4.8
AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein. 27 4.8
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 27 6.3
Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical pr... 27 6.3
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.3
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.3
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 27 6.3
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 27 6.3
Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical pr... 27 8.3
U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical p... 27 8.3
AC090999-12|ABD63206.1| 257|Caenorhabditis elegans Hypothetical... 27 8.3
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 240 bits (588), Expect = 3e-64
Identities = 107/148 (72%), Positives = 133/148 (89%)
Frame = +3
Query: 6 REQHDQIGKFVEGTVAEGAPIIPISAQLKYNIEVLCEYITKKIPVPLRDFTSPPRMIVIR 185
RE ++QI FV+GTVAE AP+IPISAQLKYN++++CEY+ KKIPVP+RDF SP R+I+IR
Sbjct: 200 RENYEQIAGFVQGTVAENAPVIPISAQLKYNVDLVCEYLCKKIPVPVRDFKSPARLIIIR 259
Query: 186 SFDVNKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDSDGKLTCRPIFSRIVS 365
SFDVNKPG EV++L+GGVAGG++ +G+L VG EIEVRPG+VSK + G+L CRPIFSRI S
Sbjct: 260 SFDVNKPGSEVENLKGGVAGGTLTKGILRVGQEIEVRPGIVSKTATGQLQCRPIFSRIDS 319
Query: 366 LFAEQNELQYAVPGGLIGVGTKIEPTLC 449
LFAE+N+L+YAVPGGLIGVGTKI+PTLC
Sbjct: 320 LFAEKNQLEYAVPGGLIGVGTKIDPTLC 347
>U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical
protein K09E3.7 protein.
Length = 859
Score = 31.9 bits (69), Expect = 0.22
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 286 ISMPTVSTP*RMEPPATPPLRSSTSQPGLFT-SNERITIIRGGDVKSLSGTGIFFVIYSQ 110
+S+PT STP + P P + S++S PG+ + N R TI G + S T I Q
Sbjct: 662 LSLPTQSTPPTI-PAFIPTIPSTSSMPGIISFPNTRHTIAPGDVAPANSLTLFLRAIEQQ 720
Query: 109 RT 104
RT
Sbjct: 721 RT 722
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 30.3 bits (65), Expect = 0.68
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = -2
Query: 409 PPGTAYWSSFCSANSDTIRENIGRQVNLPSESLLTKPGRTSISMPT-VSTP*RMEPPATP 233
P T SS + S T+ Q +LPS S +T G T ++ +++ +T
Sbjct: 766 PSSTGATSSGSTVGSSTMGST---QSSLPS-STMTNTGSTGSTVTNQLASSSTYGASSTE 821
Query: 232 PLRSSTSQPGLFTSNERITIIRG-GDVKSLSGTG 134
P+ SST+ PG TS + +G ++ S TG
Sbjct: 822 PIASSTANPGSSTSGQTAVTTQGSSSTQTNSNTG 855
>AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical
protein C36C9.1 protein.
Length = 832
Score = 29.1 bits (62), Expect = 1.6
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Frame = -2
Query: 403 GTAYWSSFCSANSDTIRENIGRQVNLP-----SESLLTKPGRTSISMPTVSTP*RMEP-- 245
G + SSF N+ T+ EN+ ++ ++ S ++ +++ TV P
Sbjct: 407 GEDFDSSFLDVNNRTLPENLSKKTSVQKHRRGSSRSASRLASLDVTLETVEEDVEPTPSP 466
Query: 244 -PATPPLRSSTSQPGLFTSN-ERITIIRGGDVKSLSGTGIFFVIYSQRTSILYLS*ADIG 71
P++PP S G F +N E + + GD T F QRT L + +
Sbjct: 467 HPSSPPKISRRKWTGTFDANVEEMRRLLHGDPGKPKSTKRAFSSKDQRTPSLSIITSPKA 526
Query: 70 MMGAPSATVPSTNFPI 23
++G T + + I
Sbjct: 527 LIGEKCLTASNKSSKI 542
>U41533-9|AAS60256.1| 155|Caenorhabditis elegans Hypothetical
protein R05F9.1d protein.
Length = 155
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 229 GAESPGAPSFRGCLPSAWRSKYDRA**VRTRT 324
GAE+ G+ S RGCL S RS+ D A TRT
Sbjct: 54 GAETDGSSSSRGCLKSE-RSRKDHASTSSTRT 84
>U41533-8|AAA83171.2| 588|Caenorhabditis elegans Hypothetical
protein R05F9.1b protein.
Length = 588
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 229 GAESPGAPSFRGCLPSAWRSKYDRA**VRTRT 324
GAE+ G+ S RGCL S RS+ D A TRT
Sbjct: 54 GAETDGSSSSRGCLKSE-RSRKDHASTSSTRT 84
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 325 PSESLLTKPGRTSISMPTVSTP*RMEPPATPPLRSSTSQPGLFTSNER 182
P+ SL PG ++ S+ + P PP +SS GL +S+E+
Sbjct: 77 PTNSLPMPPGTSTPSLSSAENSGNGPHPPAPPPQSSAESSGLPSSSEQ 124
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 385 SFCSANSDTIRENIGRQVNLPSESLLTKPGRTSISMPTVSTP*RMEPPATPPLRSSTS 212
S S ++ T+ G +PS S T P +S S + TP +T P+ SSTS
Sbjct: 950 STSSGSTVTVGSTEGSSSPIPSTSQNTNPSTSSGSSMSTQTP--QSSQSTSPVESSTS 1005
>U40934-7|AAA81685.1| 168|Caenorhabditis elegans Hypothetical
protein F35H10.2 protein.
Length = 168
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 182 YHNHTRRRCEV-SKRDGNLFRYIFTENLY 99
Y +H +RC V SKR L+R ENLY
Sbjct: 136 YISHIYQRCRVTSKRHHRLYRLFTNENLY 164
>Z74037-5|CAA98493.3| 509|Caenorhabditis elegans Hypothetical
protein F57B7.4 protein.
Length = 509
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 155 EVSKRDGNLFRYIFTENLYIIFELSGYRYDGSSFRDSALH 36
E+S D + + E L+ +FE + YDG SF + LH
Sbjct: 88 EMSNGDSHRAIHNLKEYLHALFEQTKIIYDGISFGNETLH 127
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 4.8
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = -2
Query: 424 PTPIRPPGTAYWSSFCSANSDTIRENIGRQVNLPSESLLTKPGRTSISMPTVSTP*RMEP 245
PTP+ ++ +A T+ +Q N S L T G S PT++ P
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTV--GTSKQTNTISPHLSTITGSIVTSTPTMA-PQTSAS 546
Query: 244 PATPPLRSSTSQP 206
P T P ++ SQP
Sbjct: 547 PTTTPTHTTASQP 559
>AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical
protein F29G9.2a protein.
Length = 535
Score = 27.5 bits (58), Expect = 4.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 415 IRPPGTAYWSSFCSANSDTIR--ENIGRQVNLPSESLLTKPGRTSISMPTVSTP*RMEPP 242
I P A SS +++ T+ + + R V +PS + + G +S S + ++ + PP
Sbjct: 3 ITTPRRANMSSESGSSASTVHYAKPVLRHVPMPSSTTPSSIGSSSSSSSSYASSTKQTPP 62
Query: 241 ATPPLRSST 215
+P +R T
Sbjct: 63 RSPVIRYPT 71
>AB044562-1|BAA96734.1| 509|Caenorhabditis elegans MIG-17 protein.
Length = 509
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 155 EVSKRDGNLFRYIFTENLYIIFELSGYRYDGSSFRDSALH 36
E+S D + + E L+ +FE + YDG SF + LH
Sbjct: 88 EMSNGDSHRAIHNLKEYLHALFEQTKIIYDGISFGNETLH 127
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 292 TSISMPTVSTP*RMEPPATPPLRSSTSQPGLFTSNE 185
TS P VS+P R P P SS+ +PG ++ NE
Sbjct: 73 TSFDEP-VSSPPRYRPSENPGPSSSSYEPGHYSFNE 107
>Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical
protein M05B5.3 protein.
Length = 403
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 292 TSISMPTVSTP*RMEPPATPPLRSSTSQPGLFTSNERITIIRGGDVKSLSGTG 134
T +S+ + + P PP+T P SST+ + +S D S +GTG
Sbjct: 215 TRVSIESDAPPNPAPPPSTTPETSSTTPSTVTSSTSDPNAPTASDAASGTGTG 267
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 396 RIGAHSVQRTATRYGRILDDKSICRPSPYSLSPVVLRS 283
R+ H Q + ++L+D+ C S + L PV+ RS
Sbjct: 685 RLCDHMEQCVVAAFQQLLEDEEACIQSVHRLMPVITRS 722
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 396 RIGAHSVQRTATRYGRILDDKSICRPSPYSLSPVVLRS 283
R+ H Q + ++L+D+ C S + L PV+ RS
Sbjct: 685 RLCDHMEQCVVAAFQQLLEDEEACIQSVHRLMPVITRS 722
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 75 ISAQLKYNIEVLCEYITKKIPVPLRDFTSPPRMIVIRSFDVNKPGCEVDDLRGGVAGGSI 254
ISA+ N++ + E I ++P P +P R ++ S+ D RG +A +
Sbjct: 192 ISAKSGLNVDKVLEAIIDRVPAPTAIIDAPFRSMIFDSY--------FDHFRGAIAHIMV 243
Query: 255 LQGVLTVGMEIE 290
+G + G +I+
Sbjct: 244 KEGSVKKGDKIQ 255
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 292 TSISMPTVSTP*RMEPPATPPLRSSTSQPGLFTSNE 185
TS P VS+P R P P SS+ +PG ++ NE
Sbjct: 73 TSFDEP-VSSPPRYRPSENPGPSSSSYEPGHYSFNE 107
>Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical
protein R11A5.7 protein.
Length = 664
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 268 STP*RMEPPATPPLRS-STSQPGLFTSNERIT-IIRGGDVKSLSGTGIFF 125
ST R PP PP+ S ST T E +T +IR + S + T FF
Sbjct: 559 STRARPTPPMAPPIMSPSTEFSTTTTEEEDVTGVIRSSSIASRATTYGFF 608
>U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical
protein F46F11.8 protein.
Length = 329
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 316 SLLTKPGRTSISMPTV-STP*RMEPPATPPLRSSTSQPGLFTSNERI 179
S+L K +IS+PT STP R P + P STS FT+ +
Sbjct: 129 SILAKTMERAISVPTTPSTPARAAPASVP----STSMSAEFTAKNEL 171
>AC090999-12|ABD63206.1| 257|Caenorhabditis elegans Hypothetical
protein Y82E9BR.23 protein.
Length = 257
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 218 DLAARLVHVKRTYHNHTRRRCEVSKRD 138
+L A +H +R Y+N R E+ KRD
Sbjct: 211 NLRALCIHFQRAYNNKDTERMELYKRD 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,090,275
Number of Sequences: 27780
Number of extensions: 241632
Number of successful extensions: 929
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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