Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B08
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    29   0.42 
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   1.3  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.3  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   1.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    26   3.0  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   4.0  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   5.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   6.9  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   6.9  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.1  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   9.1  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 337 QSLDTCENMCIKAWALWMVAEQQKIQLKQLHANVIDVEIQISKILS 474
           +SLD  EN+ +KAW ++ +AE Q     + ++N    E  I KIL+
Sbjct: 155 KSLDFNENL-LKAWEIYCLAEAQTCIFSKANSNDTTSESIIVKILA 199


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 301 RRKRSGDHRKRYQSLDTCENMCIKAWALWMVAEQQKIQL 417
           R  RSG   K++++ D C      AWA  + A++ + QL
Sbjct: 67  RGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQL 105


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 123 PDKDDEDDFKLVYEDDKSQLNTELTHDEP 209
           P+KDDE+    V  D K+QLN  +   +P
Sbjct: 90  PEKDDENTNLQVVVDTKAQLNVNVNDGKP 118


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 81  IDKSSTLNVLKSITPDKDDEDDFKLVYEDDKSQLNTELT--HD-EPETSKS 224
           + +SST ++  S + + D  DD   V   +KS +N  ++  HD E E  KS
Sbjct: 364 LSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESENGKS 414


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 KSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSI 227
           KS+  + DD  DF+  Y +DKS   T L +   +   S+
Sbjct: 30  KSLKNNNDDYSDFRGSYLNDKSSFQTPLRNGSYQPKGSL 68


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 126 DKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNEVNGNHK 257
           D DD +DF+   E   S +NT ++    + S ++N N   G+ +
Sbjct: 428 DDDDPNDFRPAVERQSSTMNTRMS----QPSSAVNTNRSYGSEQ 467


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 424 LHANVIDVEIQISKILSNCEHYGVTVDKELASRL 525
           LH  ++D  ++ + I+S+  HY  ++DK   SR+
Sbjct: 78  LHVKMLDQLLEEAMIMSDNLHYWESIDKNWYSRV 111


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 108 LKSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNEVNGNHKRR 263
           L  I   +D+ DD    +ED+   L    T DE E  ++++ +E + + K++
Sbjct: 788 LSEIAHSEDEFDDTVDFFEDENDLLPFNETDDEEEI-QTVDHSETHSHKKKK 838


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 319  DHRKRYQSLDTCENMCIKAWALWMVAEQQKIQLKQLHANVIDVEIQISKILSNC 480
            D  K+  SL   E + +KA     V         Q    V  ++IQ+ ++L+NC
Sbjct: 1224 DSNKKNSSLTDAERLFVKATTKHFVFLLTDFMSAQ---TVYQIDIQVKELLTNC 1274


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 81  IDKSSTLNVLKSITPDKDDEDDFKLVYEDD 170
           IDK   ++V   +  D DDE++ ++V +DD
Sbjct: 238 IDKIIQIDVEIQVEVDDDDEEEDEVVTDDD 267


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 406 KIQLKQLHANVIDVEIQISKILSNCEHYG 492
           KI L      VI VE+Q+S+ L +  H G
Sbjct: 359 KIMLTVYTGKVISVEVQLSENLYDTSHIG 387


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +3

Query: 102 NVLKSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNEVN 245
           +++K+   ++D+ED+  + YED+ S + T    DE +  + +N + V+
Sbjct: 35  DMIKNARNNEDNEDNHHINYEDE-SDVGT----DEQKQQEGVNSSAVS 77


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 45  GSKNHRSTNRL*IDKSSTLNVLKSITPDKDDEDDFKLVYEDDKSQL 182
           G+ N  +T+   I  S T    K+ +   D EDD   V E+DK  L
Sbjct: 781 GTSNQNTTSE--ITTSETTATEKTPSNSSDTEDDVGDVVENDKDLL 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,978
Number of Sequences: 5004
Number of extensions: 28192
Number of successful extensions: 119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)