Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B08
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     32   0.25 
09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704...    32   0.32 
04_03_0357 + 14852584-14853058,14853116-14855754                       29   3.0  
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    28   5.3  
09_03_0168 - 12983476-12983780,12984180-12984684                       27   7.0  
01_06_0169 - 27172182-27172361,27172552-27172889,27172983-271734...    27   7.0  
04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554     27   9.2  
04_03_0309 - 14186880-14187151,14187428-14188652                       27   9.2  

>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 84   DKSSTLNVLKSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNE 239
            ++   LN L   + D+  E+ F L+YEDD  + N E  H++ E  +   G++
Sbjct: 1065 EEQQALNELNDASEDEHREE-FGLLYEDDNGEDNDEQDHEQSEDEEIQYGSD 1115


>09_02_0296 +
           7041463-7042351,7042450-7042606,7042758-7042839,
           7043082-7043120
          Length = 388

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 81  IDKSSTLNVLKSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNEVNGNHK 257
           I ++   +V+   TPD  D++   L+   +K   + +L  D+       NG+ + G H+
Sbjct: 268 IKRAKYFSVILDCTPDTSDQEQMSLIIRYEKELKDLDLDIDDVRGQGYDNGSNMKGKHQ 326


>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 117  ITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNEVNGNHKRR 263
            +  D+DDEDD +   E++K +   EL  +     +  NG E +   +RR
Sbjct: 960  VESDEDDEDDSEEDSEEEKGKTWEELEREASNADRE-NGAESDSEEERR 1007


>10_08_0343 -
           16960764-16960895,16961166-16961171,16961272-16961640,
           16962118-16962304,16962567-16962759,16962864-16963137,
           16963215-16963374,16963985-16964199,16964784-16964876,
           16965192-16965260,16965293-16965445,16965534-16965737,
           16966416-16966691,16967336-16967431,16967585-16967788,
           16967877-16968069,16968229-16968374,16968771-16969425,
           16971462-16971774,16971989-16972139,16972602-16973815,
           16973933-16974182,16974784-16975035
          Length = 1934

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 84  DKSSTLNVLKSITPDKDDEDDFK 152
           D S+ LN+LK I    DD D+FK
Sbjct: 350 DDSTALNLLKRILKSGDDSDNFK 372


>09_03_0168 - 12983476-12983780,12984180-12984684
          Length = 269

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = +3

Query: 81  IDKSSTLNVLKSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNE 239
           +D +S  ++ + I  D +DE+D KL   DD+ + + E + ++  T +  + ++
Sbjct: 50  LDHASNNSLDEDINEDAEDEEDGKLGEVDDRCEEDNEGSEEDVGTDEVTDNDD 102


>01_06_0169 -
           27172182-27172361,27172552-27172889,27172983-27173426,
           27174731-27174836,27175401-27175495,27175802-27175958
          Length = 439

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 102 NVLKSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNEVNGN 251
           +++  +    + E+D  + YED +SQLN     D+ E + S + N    N
Sbjct: 85  DLISEVAVSPNMENDMLVNYEDIRSQLNVVNYFDKDEDANSASYNSCTVN 134


>04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554
          Length = 513

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 81  IDKSSTLNVLKSITPDKDDEDDFKLVYEDDKSQLNTELTHDEPETS 218
           +D  +TL   +S   D DD+D+      D K Q  ++    EPE +
Sbjct: 455 VDTLATLAAFRSADDDDDDDDEKPTTEADAKLQTVSDHVTVEPEAA 500


>04_03_0309 - 14186880-14187151,14187428-14188652
          Length = 498

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 126 DKDDEDDFKLVYEDDKSQLNTELTHDEPETSKSINGNEVNG 248
           D DD+DD     EDD     + +   EP TS+S+  +  NG
Sbjct: 235 DGDDDDD-----EDDMMTPPSTMVEGEPSTSRSVYKDSRNG 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,115,168
Number of Sequences: 37544
Number of extensions: 158286
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)