Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B07
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.3
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 26 3.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 3.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 23 3.8
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 25 5.8
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 25 7.6
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 7.6
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 248 VALPLYSQLRLPQTRSGITQIMCYFHTARVICGRVHVSHHTRAPVSPSRGDS*YELFLLT 427
+ LP++ + L + IT ++ A +C VSHH VS S + LFL
Sbjct: 291 ILLPIFQKNFLTGFPAEITNLVLTHLDAPSLCAVSQVSHHWYKLVS-SNEELWKSLFLKD 349
Query: 428 SSVWDS 445
WDS
Sbjct: 350 GFFWDS 355
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 491 TPVPPALEPTSNNRPVSPKRRRSARTARTMNRPVKVKPVPECGVT 357
TPV P + PTS++ P++ ++ + + PV P+ T
Sbjct: 407 TPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCT 451
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 374 APVSPSRGDS*YELFLLTSSVWDSRVGCYSSAPVQAVRASCFTQTKRDEP 523
AP P++ + +E+FL + SR GC P A T+T R +P
Sbjct: 49 APKLPAKDSTDFEVFLENPVIIFSRPGC----PYSAAAKKLLTETLRLDP 94
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 208 AVATGLCKMKSPNSTHRLPSTSPSVGCWCLGESSIRLMFHRC 83
A++ M++P S+H +T S G W + RL F C
Sbjct: 85 AISIPFIGMQTPASSHGKQTTQVSTGNWSKNAVAARLGFLAC 126
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 23.4 bits (48), Expect(2) = 3.8
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 275 RLPQTRSGITQIMCYFHTARVICGRVHVSHHTRAPVSPSRGD 400
R P GI + C FH + H+ + T AP + D
Sbjct: 1381 RFPSKTLGIVSLNCGFHARALFYWEQHIRNAT-APYAALESD 1421
Score = 20.6 bits (41), Expect(2) = 3.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +2
Query: 428 SSVWDSRVGCY 460
S WDS + CY
Sbjct: 1460 SGTWDSALSCY 1470
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 212 LLSCLLQDGRGCVALPLYSQLRLPQTRSGITQIM 313
L + + G + P YSQ +P T S +T I+
Sbjct: 366 LSNSMSSTSNGALNSPSYSQAAIPNTNSSLTSIL 399
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 39 RQFKTCLALKYISHLQRWNISRILLSPRHQQPTLGDVLGRRWV 167
+Q T L+YI + I +L +P+L +LG WV
Sbjct: 374 KQIPTLQPLRYIPEGAKKIILSLLNPDSQNRPSLDSILGTAWV 416
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -1
Query: 461 SNNRPVSPKRRRSARTARTMNRPVKVKPVPECGVTRVPAHISLEQY 324
S +P+ SA R+ N +++P+ + +TR+ +I +QY
Sbjct: 193 SGLKPIETVMSTSAVLVRSSNCSSELEPLLQTIITRIRGYIIAQQY 238
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 24 ERGATRQFKTCLALKYIS-HLQRWNISRILLSPRHQQPTLG 143
+R A R+F C ALK S H + ++ +R + TLG
Sbjct: 52 QRNAKREFSRCAALKNFSYHARCFHATRAVWEMTDPYKTLG 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,809
Number of Sequences: 5004
Number of extensions: 52088
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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