Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B07
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF025468-1|AAF02175.1|  174|Caenorhabditis elegans Serpentine re...    29   3.0  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   4.0  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical...    27   7.0  
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    27   9.2  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
           protein F53H2.3 protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 91  GTSAGYYFRRGTNNQ-HWVMYLEGGGYCWDSSSCKGRWRRR 210
           G SA      G NN+ +W   +   GY ++ +  KG WRRR
Sbjct: 270 GISAATTTANGNNNEEYWFYDVATDGYYYEQNGAKG-WRRR 309


>AF025468-1|AAF02175.1|  174|Caenorhabditis elegans Serpentine
           receptor, class h protein105 protein.
          Length = 174

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 428 SSVWDSRVGCYSSAPVQAVRASCFTQTKRDEPCDQRASASPPSR 559
           SS  DSR+    S      R  C T++ R+EP   R + S P R
Sbjct: 10  SSFTDSRLEAGQSRKRSVARRVCVTRSAREEPRRTRQADSSPRR 53


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 488 PVPPALEPTSNNRPVSPKRRRSARTARTMNRPVKVKPVPECGVTRVP 348
           P+PP+  P ++ RPV+  +  +   A T  RP    P P    TR P
Sbjct: 333 PLPPSPPPRTSKRPVT--QAPTTPRATTTRRPTTTTPRPTPRRTRRP 377


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 261 SGSATHPRPSCRRHESRSPSPPAFAR*RVPT 169
           S SA+   P+ +R +SRS SPPA  R R P+
Sbjct: 414 SPSASKSPPAPKRAKSRSKSPPAPRRRRSPS 444


>AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical
           protein Y75B8A.10 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 180 FILQRPVATATCSHVFCKMA-AGASRSRFTLS*GCRKP 290
           F    P A   CSHVFC+   A AS+  F     CR P
Sbjct: 177 FTCSTPKAMLRCSHVFCETCLATASKWDFDGCPVCRAP 214


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 491 TPVPPALE----PTSNNRPVSPKRRRSARTARTMNRPVKVKPVP 372
           TPV P +E    P + N+  + K ++ + + +   +PV+  P P
Sbjct: 277 TPVEPVVESTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAP 320


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
            protein Y71A12B.4 protein.
          Length = 1913

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 176  TLHLAKAGGDGDLLSCLLQDG 238
            TLH+A AGG  +++  LL++G
Sbjct: 1049 TLHMAAAGGHANIVKILLENG 1069


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = -1

Query: 551 AATRMPFDXXXXXXXXXXSMTPVPPALEPTSNNRPVSPKRRRSAR---TARTMNRPVKVK 381
           A T   F+            TP    L   +   P +PK  R+ R   T RT   P  V+
Sbjct: 435 ADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVE 494

Query: 380 PVPE 369
           P PE
Sbjct: 495 PEPE 498


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = -1

Query: 551 AATRMPFDXXXXXXXXXXSMTPVPPALEPTSNNRPVSPKRRRSAR---TARTMNRPVKVK 381
           A T   F+            TP    L   +   P +PK  R+ R   T RT   P  V+
Sbjct: 385 ADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVE 444

Query: 380 PVPE 369
           P PE
Sbjct: 445 PEPE 448


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = -1

Query: 551 AATRMPFDXXXXXXXXXXSMTPVPPALEPTSNNRPVSPKRRRSAR---TARTMNRPVKVK 381
           A T   F+            TP    L   +   P +PK  R+ R   T RT   P  V+
Sbjct: 435 ADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVE 494

Query: 380 PVPE 369
           P PE
Sbjct: 495 PEPE 498


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = -1

Query: 551 AATRMPFDXXXXXXXXXXSMTPVPPALEPTSNNRPVSPKRRRSAR---TARTMNRPVKVK 381
           A T   F+            TP    L   +   P +PK  R+ R   T RT   P  V+
Sbjct: 435 ADTAFNFEETPATPRSSVPATPTESNLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVE 494

Query: 380 PVPE 369
           P PE
Sbjct: 495 PEPE 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,085
Number of Sequences: 27780
Number of extensions: 321839
Number of successful extensions: 1175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)