Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B07
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.91 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 284 QTRSGITQIMCYFHTARVICGRVHVSHHTRAPV 382
           Q RS      C  HT R   G    SH ++ P+
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGGPRKSHESQCPM 314


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 360  HTTLGHRFHLHGAIHSTSCSC*PPPFGTHGSVVTRRLQ 473
            + TL H F  H    +  C+  PP   +  SV +RR Q
Sbjct: 1733 NNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQ 1770


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 360  HTTLGHRFHLHGAIHSTSCSC*PPPFGTHGSVVTRRLQ 473
            + TL H F  H    +  C+  PP   +  SV +RR Q
Sbjct: 1729 NNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQ 1766


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 453 PTRESQTEEVSKNSSYYESPREGETGARVWCDTCTRPH 340
           P+   +TEE  K +    SP E ++   +   T  R H
Sbjct: 531 PSSMKETEEEKKKTKQSLSPSENQSKMEILPKTTQRQH 568


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   TRDNS**ERGATRQFKTCLALKYISHLQRWN 95
           +RD +  ER   R+  + L+  YIS++  +N
Sbjct: 305 SRDKTERERSKERKIISSLSNNYISNISNYN 335


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 522 GSSRFVCVKHDARTACTGADE*QPT 448
           G+S  +C+ ++   A  G DE Q T
Sbjct: 8   GASVLICLLNETAKAIIGVDECQAT 32


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 345 GGYTCHTTLGHRFH 386
           G   CHT LGH  H
Sbjct: 270 GDMFCHTGLGHYGH 283


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   TRDNS**ERGATRQFKTCLALKYISHLQRWN 95
           +RD    ER   R+  + L+  YIS++  +N
Sbjct: 67  SRDKRERERSKERKIISSLSNNYISNISNYN 97


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   TRDNS**ERGATRQFKTCLALKYISHLQRWN 95
           +RD    ER   R+  + L+  YIS++  +N
Sbjct: 67  SRDKRERERSKERKIISSLSNNYISNISNYN 97


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 28  VAPPDSLKLVWLSNT 72
           + PPD  K +WL  T
Sbjct: 467 IFPPDIAKRLWLGET 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,916
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)