Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B06
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   226   9e-60
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    30   0.88 
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    30   1.2  
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     30   1.2  
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     30   1.2  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  226 bits (552), Expect = 9e-60
 Identities = 99/140 (70%), Positives = 125/140 (89%)
 Frame = +2

Query: 29  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 208
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 209 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 388
           DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124

Query: 389 CEPKKFGGPGARARYQKSYR 448
            E KKFGGPGARARYQKSYR
Sbjct: 125 RESKKFGGPGARARYQKSYR 144


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 305 YVDEASKKEIKDILVQYDRSLLVADPRRCE 394
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 197 FSGVDIRVTVKG---GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSL 367
           F G + R T+ G   GG VA + +    ++  L + +Q+Y+  +S      + +Q +R+ 
Sbjct: 114 FGGNNKRTTLLGHSYGGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTY 172

Query: 368 LVADPRRCEPK 400
             A+   C PK
Sbjct: 173 RFAEHANCLPK 183


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 32  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 211
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592

Query: 212 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 352
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 32  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 211
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590

Query: 212 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 352
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 32  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 211
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590

Query: 212 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 352
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 32  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 211
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592

Query: 212 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 352
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 365 LLVADPRRCEPKKFGGPGARARY 433
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical
           protein M153.3 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 118 SIYTQHSMSSFAVCYRSCSFLTAEN 44
           S+  QHS+ +F VC ++C F  + N
Sbjct: 130 SLTCQHSVFAFRVCRKTCGFCASVN 154


>AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical
           protein Y53F4B.25 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 337 RHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQIPEILP 447
           +H+S +R++     P  L+   +R+  +P QIP + P
Sbjct: 203 KHNSPVRRQLVDPLPPLLQPSPVRFPAQPWQIPPLHP 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,917
Number of Sequences: 27780
Number of extensions: 296859
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)