Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B05
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   103   1e-23
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   103   2e-23
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    26   2.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   5.1  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   6.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   9.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   9.0  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  103 bits (248), Expect = 1e-23
 Identities = 58/95 (61%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +1

Query: 88  RELLTL-EKGS*RCLKACSTTSS-GRVGVLDEKQMKLDYVLGLKIEDFLGDAXFFRXQVF 261
           RELLTL EK   R  +  +      R+G+LDE +MKLDYVL L+IEDFL      + QVF
Sbjct: 57  RELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERR--LQTQVF 114

Query: 262 KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 366
           K GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VR
Sbjct: 115 KLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVR 149



 Score = 58.8 bits (136), Expect = 4e-10
 Identities = 29/49 (59%), Positives = 34/49 (69%)
 Frame = +3

Query: 348 SFVHRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGGATNDEEED 494
           SFV R LD+ KHIDF+L SP+GGGR GR KRK LR    GG   + EE+
Sbjct: 145 SFVVR-LDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGGEGEEAEEE 192


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  103 bits (247), Expect = 2e-23
 Identities = 58/95 (61%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +1

Query: 88  RELLTL-EKGS*RCLKACSTTSS-GRVGVLDEKQMKLDYVLGLKIEDFLGDAXFFRXQVF 261
           RELLTL EK   R  +  +      R+G+LDE +MKLDYVL L+IEDFL      + QVF
Sbjct: 57  RELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERR--LQTQVF 114

Query: 262 KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 366
           K GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VR
Sbjct: 115 KLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVR 149



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 30/48 (62%), Positives = 33/48 (68%)
 Frame = +3

Query: 348 SFVHRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGGATNDEEE 491
           SFV R LD+ KHIDF+L SP+GGGR GR KRK LR   GG     EEE
Sbjct: 145 SFVVR-LDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGEGEEAEEE 191


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 246 QTSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGEHSFVHR 362
           QT+G+Q  S   N SC  +D         AG    F+HR
Sbjct: 343 QTAGIQMLSHLSNTSCAEVDLAARKVIKDAGYGEYFIHR 381


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 130 SNIFRILSRVSTVHGSLTMRASVYLTLVPILSPGI 26
           SN++R  SR+ T  GSL   A   L   P + P +
Sbjct: 288 SNLYRRQSRLRTFCGSLYFAAPELLNAQPYIGPEV 322


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 252 SGVQGWSCEVNPSCP 296
           +G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 223 SPQSSNRAHNPVSSVSHQALRP 158
           S Q+   AHNP +SVS + +RP
Sbjct: 93  SSQNDAFAHNPSTSVSVELVRP 114


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 137 HAFKHL*DPFSSVNSSRQPYDASERVLDPRADSQ 36
           H F+HL  P  S N+S      S  V D  ++S+
Sbjct: 105 HHFEHLITPLPSTNASHSEVSLSAGVNDLNSNSE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,566
Number of Sequences: 5004
Number of extensions: 34517
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)