Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B05
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 94 7e-20
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 94 7e-20
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 94 7e-20
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 58 4e-09
07_03_1357 - 25982861-25983068,25983354-25983361 52 3e-07
03_02_0182 - 6216991-6217238,6218076-6218197,6218412-6218497,621... 30 1.3
12_02_0441 + 19115990-19116478 29 1.7
07_03_0366 + 17321948-17322331 29 1.7
02_04_0311 + 21936812-21937861 29 1.7
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 29 2.2
04_04_1322 + 32640414-32642327 29 2.2
07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217... 29 3.0
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 29 3.0
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 28 3.9
03_02_0167 - 6088818-6089870 28 3.9
08_02_1488 + 27485154-27485390,27485441-27485968 28 5.2
06_02_0247 - 13465763-13466227 28 5.2
06_03_0267 + 18970578-18972464 27 6.8
03_02_0940 + 12583131-12583280,12583805-12583996,12584185-125843... 27 6.8
10_01_0133 + 1621574-1625779 27 9.0
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072... 27 9.0
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 93.9 bits (223), Expect = 7e-20
Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Frame = +1
Query: 88 RELLTL-EKGS*RCLKA-CSTTSSGRVGVLDEKQMKLDYVLGLKIEDFLGDAXFFRXQVF 261
R LLTL EK R + R G+L + Q KLDYVL L +E+FL A + VF
Sbjct: 59 RHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFL--ARRLQTLVF 116
Query: 262 KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 366
KAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR
Sbjct: 117 KAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 151
Score = 63.7 bits (148), Expect = 9e-11
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = +3
Query: 348 SFVHRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGGATNDEEED 494
SF+ R ++S KHIDFSL SPFGGG GRVKRKN +K GGG +EE++
Sbjct: 147 SFMVR-VESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 194
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 93.9 bits (223), Expect = 7e-20
Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Frame = +1
Query: 88 RELLTL-EKGS*RCLKA-CSTTSSGRVGVLDEKQMKLDYVLGLKIEDFLGDAXFFRXQVF 261
R LLTL EK R + R G+L + Q KLDYVL L +E+FL A + VF
Sbjct: 82 RHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFL--ARRLQTLVF 139
Query: 262 KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 366
KAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR
Sbjct: 140 KAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 174
Score = 63.7 bits (148), Expect = 9e-11
Identities = 30/49 (61%), Positives = 37/49 (75%)
Frame = +3
Query: 348 SFVHRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGGATNDEEED 494
SF+ R ++S KHIDFSL SPFGGG GRVKRKN +K GGG +EE++
Sbjct: 170 SFMVR-VESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 217
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 93.9 bits (223), Expect = 7e-20
Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Frame = +1
Query: 88 RELLTL-EKGS*RCLKA-CSTTSSGRVGVLDEKQMKLDYVLGLKIEDFLGDAXFFRXQVF 261
R LLTL EK R + R G+L + Q KLDYVL L +E+FL A + VF
Sbjct: 275 RHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFL--ARRLQTLVF 332
Query: 262 KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 366
KAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR
Sbjct: 333 KAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 367
Score = 57.6 bits (133), Expect = 6e-09
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3
Query: 348 SFVHRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGG 470
SF+ R ++S KHIDFSL SPFGGG GRVKRKN +K GGG
Sbjct: 363 SFMVR-VESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 58.0 bits (134), Expect = 4e-09
Identities = 38/80 (47%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 88 RELLTL-EKGS*RCLKA-CSTTSSGRVGVLDEKQMKLDYVLGLKIEDFLGDAXFFRXQVF 261
+ELLTL EK R + R G+L E Q KLDYVL L +E+FL + VF
Sbjct: 48 QELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCR--LQTIVF 105
Query: 262 KAGLAKSIHHARILIRQRHI 321
K G KSIHH +LIRQ HI
Sbjct: 106 KNGTVKSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +3
Query: 348 SFVHRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGGATNDEEED 494
SF+ R L+S KHI FSL SP GG + RVKRKN +K GGG +EEE+
Sbjct: 13 SFIVR-LESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 59
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 322 RVRKQVVNIPSFIVR 366
RV +Q+VNIPSFIVR
Sbjct: 3 RVGRQLVNIPSFIVR 17
>03_02_0182 -
6216991-6217238,6218076-6218197,6218412-6218497,
6219105-6219218
Length = 189
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -3
Query: 470 AAAMALAQVLPLDATGPAAAERRLQREVNVLAGVQRTMNEGMFTTCLRTRICL 312
AA MA+A A P R +R V +G+ RT N+G F CL
Sbjct: 86 AAGMAIAAGAKAAAVVPTQRRRGGERRVKTQSGLGRTDNDGSFPLLRALSCCL 138
>12_02_0441 + 19115990-19116478
Length = 162
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 399 KSPFGGGRSGRVKRKNLRKGHGGGATNDEEED 494
K+ GGG GR K+ KG GGG ++EEE+
Sbjct: 124 KNGRGGGGGGRKKK---GKGKGGGGEDEEEEE 152
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 375 GKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGGATNDE 485
G ++ +S GGG R +R+ R+G GGGA E
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGAMEAE 68
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 497 LIFLLVIGGAAAMALAQVLPL-DATGPAAAERRLQREVNVLAGV 369
L+ LLV+GG +A AQ P TG A R + + V+ GV
Sbjct: 12 LLLLLVVGGGFHVANAQASPAPPQTGTRAVNRAVSTVITVVIGV 55
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 246 QTSGVQGWSCEVNPSCPHLDQTEAY 320
+++GV WS VNPS +L TEA+
Sbjct: 105 KSAGVSTWSLRVNPSSGNLHPTEAH 129
>04_04_1322 + 32640414-32642327
Length = 637
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -2
Query: 180 FLIKHSDPTRRRSRACLQTSLGSFLECQQFTAALRCERACT*PSCRFSARGSIVLERRH 4
F IKH R R C +++ G F C RC+ P+C A+G + + H
Sbjct: 326 FCIKHGGGKRCRVEGCSRSAEGQFGLCISHGGGRRCQY----PNCSKGAQGGTMFCKSH 380
>07_01_0303 -
2171796-2172611,2173133-2174062,2174659-2175132,
2175569-2175609,2176298-2176337
Length = 766
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 88 GSLTMRASVYLTLVPILSPGIHSS 17
G +TMR+ Y+T + ILS +HSS
Sbjct: 526 GKVTMRSLFYVTFLAILSINVHSS 549
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 6 GGALELWIPGLRIGTRVKYTLARIVRLP*TVDTRERILKM 125
GGA ++ P + RV+YT +++ L VD E IL++
Sbjct: 46 GGASKIGDPNFEVRERVRYTRDQLLELREIVDIPEAILRI 85
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 54 VKYTLARIVRLP*TVDTR-ERILKMFEGMLY 143
+++T+ V+ P +D R E LKMFEG LY
Sbjct: 902 LQFTIQSTVKDPANLDARVEAFLKMFEGTLY 932
>03_02_0167 - 6088818-6089870
Length = 350
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 399 KSPFGGGRSGRVKRKNLRKGHGGGATNDEEED 494
K P GGG GR + G GG ++EEED
Sbjct: 103 KLPAGGGHRGR----QVLSGRSGGGVDEEEED 130
>08_02_1488 + 27485154-27485390,27485441-27485968
Length = 254
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 336 GGEHSFVHRPLDSGKHIDFSLKSPFGGGRSGRV---KRKNLRKGHGGG 470
G + V+R L+S + +++S G GR+GR +R+ LR+G G G
Sbjct: 146 GSQRGDVYRRLES-EASKSAVESLVGNGRNGRTLTERRRGLRRGGGDG 192
>06_02_0247 - 13465763-13466227
Length = 154
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 411 GGGRSGRVKRKNLRKGHGGGATNDEE 488
GGG SGR + + G GGG +EE
Sbjct: 85 GGGSSGRQSERRIWCGGGGGDDGEEE 110
>06_03_0267 + 18970578-18972464
Length = 628
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -2
Query: 180 FLIKHSDPTRRRSRACLQTSLGSFLECQQFTAALRCERACT*PSCRFSARGSIVLERRH 4
F I H R + C + + GS C+ RC T P+C A GS L + H
Sbjct: 364 FCIAHGGGRRCKHDGCTKGAQGSTNFCKAHGGGKRC----THPNCSKGAEGSTALCKAH 418
>03_02_0940 +
12583131-12583280,12583805-12583996,12584185-12584350,
12584774-12584801,12585525-12585594,12586399-12586435,
12587760-12588148
Length = 343
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 276 EVNPSCPHLDQTEAYSCPQAGGEHSFVHRPLDSGKH-IDFSLKSPFGGGRSGRVKRKNLR 452
E N + P A SCPQAGG+ + PLDS + D + + GR + L
Sbjct: 234 ESNINAPFAASLRA-SCPQAGGDTNLA--PLDSTPNAFDNAFFTDLIAGRGLLHSDQELY 290
Query: 453 KGHGGG 470
+G G G
Sbjct: 291 RGDGSG 296
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 336 GGEHSFVHRPL-DSGKHIDFSLK-SPFGGGRSGRVKRKNLRKGHGGGATNDEE 488
G E + H+ L D G+ I LK SP GR+ +KNL + H + +E
Sbjct: 385 GDERAEHHKELLDLGREIVKKLKFSPLAAKTVGRLLKKNLTRRHWSRVLDSKE 437
>07_03_1362 -
26006159-26006461,26006691-26006841,26006975-26007212,
26007293-26007503,26007631-26007755,26007895-26008023,
26008540-26009326
Length = 647
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 476 GGAAAMALAQVLPLDATGPAAAE 408
GGA A+A A VL L A PAA+E
Sbjct: 4 GGARALAAAFVLALLAAAPAASE 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,863,036
Number of Sequences: 37544
Number of extensions: 289061
Number of successful extensions: 1140
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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