Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B05
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 107 5e-24
Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z71262-1|CAA95813.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.1
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 30 1.1
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical ... 28 4.6
Z75527-4|CAA99779.2| 316|Caenorhabditis elegans Hypothetical pr... 27 8.0
U58758-14|AAB93433.2| 842|Caenorhabditis elegans High incidence... 27 8.0
DQ178236-1|ABA18178.1| 316|Caenorhabditis elegans putative low ... 27 8.0
AF178755-1|AAD52669.1| 842|Caenorhabditis elegans HIM-14 protei... 27 8.0
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 107 bits (257), Expect = 5e-24
Identities = 60/95 (63%), Positives = 71/95 (74%), Gaps = 2/95 (2%)
Frame = +1
Query: 88 RELLTLE-KGS*RCLKACSTTSS-GRVGVLDEKQMKLDYVLGLKIEDFLGDAXFFRXQVF 261
RELLTLE K R + + ++GVLDE +MKLDYVLGLK+EDFL + QVF
Sbjct: 57 RELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERR--LQTQVF 114
Query: 262 KAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 366
K GLAKSIHHARILI+Q HIRVR+QVV++PSFIVR
Sbjct: 115 KLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVR 149
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +3
Query: 348 SFVHRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHGGGATNDE 485
SF+ R LDS KHIDFSL+SP+GGGR GRVKR+ LRKG G G ++E
Sbjct: 145 SFIVR-LDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDGAGGDDEE 189
>Z81027-1|CAB02686.1| 566|Caenorhabditis elegans Hypothetical
protein AH10.1 protein.
Length = 566
Score = 31.5 bits (68), Expect = 0.37
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 351 FVHRPLDSGKHID-FSLKSPFGGGRSGRVKRKNLRK-GHGGGATNDEEED*TNKLIN 515
FVH+ L S K ID + SG+++RK L++ GGG+T + E ++K I+
Sbjct: 503 FVHKMLSSYKWIDTYEFIDAIPKLPSGKIQRKKLKEMAAGGGSTENSEASQSSKEIS 559
>Z71262-1|CAA95813.1| 418|Caenorhabditis elegans Hypothetical
protein F22D6.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 387 QCACRSPADDER-RNVHHLLADTNMPLSDQDAGM 289
QC + P+D + VHH L D +MP+SD M
Sbjct: 381 QCWAKLPSDRATMKTVHHKLKDLSMPMSDVSFSM 414
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 270 SCEVNPSCPHLDQTEAYSCPQAGGEHS 350
+CE+N CP D ++CP GG H+
Sbjct: 363 ACELN--CPKCDPKHTFTCPAVGGIHN 387
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 268 GLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 363
G+ +S+ A L+ Q H+R+ ++V P+F+V
Sbjct: 118 GMCESVKTASDLVEQGHVRIGTKLVTDPAFMV 149
>AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical
protein Y20F4.2 protein.
Length = 473
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 261 QGWSCEVNPSCPHLDQTEAYSCPQ--AGGEHSFVHRPL 368
Q W + S P++ Q +YS PQ +H HRP+
Sbjct: 67 QPWGHNLGGSLPNVHQMPSYSPPQWPPNWQHEIQHRPI 104
>Z75527-4|CAA99779.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.4 protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 357 HRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHG 464
+ PL SGK D +L+ + ++G+ +K L HG
Sbjct: 115 NEPLPSGKFTDQNLQKLWSQAQNGKFSQKELNALHG 150
>U58758-14|AAB93433.2| 842|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 14 protein.
Length = 842
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 161 TLPDDVVEHAFKHL*DPFSSVNSSRQPYDASER 63
T+PD+V+EHA + ++V + + YD+ R
Sbjct: 753 TIPDEVIEHAQSLATELRANVEDTERDYDSERR 785
>DQ178236-1|ABA18178.1| 316|Caenorhabditis elegans putative low
density lipoproteinreceptor associated protein (37.4 kD)
protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 357 HRPLDSGKHIDFSLKSPFGGGRSGRVKRKNLRKGHG 464
+ PL SGK D +L+ + ++G+ +K L HG
Sbjct: 115 NEPLPSGKFTDQNLQKLWSQAQNGKFSQKELNALHG 150
>AF178755-1|AAD52669.1| 842|Caenorhabditis elegans HIM-14 protein
protein.
Length = 842
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 161 TLPDDVVEHAFKHL*DPFSSVNSSRQPYDASER 63
T+PD+V+EHA + ++V + + YD+ R
Sbjct: 753 TIPDEVIEHAQSLATELRANVEDTERDYDSERR 785
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,435
Number of Sequences: 27780
Number of extensions: 210337
Number of successful extensions: 617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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